Package: singIST
Title: comparative single-cell transcriptomics between disease models
        and a human condition
Version: 1.1.0
Authors@R: 
    c(person(given = "Aitor", family ="Moruno-Cuenca", email = "morunoaitor@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0009-0009-8133-2552")),
    person(given = "Dr. Sergio", family = "Picart-Armada", email = "sergio.picartarmada@almirall.com", role = c("rev"), comment = c(ORCID = "0000-0002-6426-8204")),
    person(given = "Dr. Alexandre", family = "Perera-Lluna", email = "alexandre.perera@upc.edu", role = c("ths"), comment = c(ORCID = "0000-0001-6427-851X")),
    person(given = "Dr. Francesc", family = "Fernández-Albert", email = "francesc.fernandez@almirall.com", role = c("ths"), comment = c(ORCID = "0000-0001-5561-0701")))
Description: Provides with toolkits to implement a full singIST
        analysis with pseudobulked Seurat objects of disease models and
        human data.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Suggests: testthat (>= 3.0.0), BiocStyle, knitr, qpdf, utils,
        RcppAlgos, glmGamPoi, methods, sp
Config/testthat/edition: 3
Imports: msigdb, GSEABase, checkmate, stats, asmbPLS, BiocParallel,
        stringr, FactoMineR, Seurat, SeuratObject, biomaRt, data.table,
        purrr, SingleCellExperiment, SummarizedExperiment, scran,
        scuttle, missMDA, S4Vectors
VignetteBuilder: knitr
Depends: R (>= 4.5.0)
biocViews: SingleCell, Classification, Transcriptomics
URL: https://github.com/DataScienceRD-Almirall/singIST
BugReports: https://github.com/DataScienceRD-Almirall/singIST/issues
Config/pak/sysreqs: cmake libfreetype6-dev libglpk-dev make libicu-dev
        libjpeg-dev libpng-dev libuv1-dev libxml2-dev libssl-dev
        python3 libx11-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:06:09 UTC
RemoteUrl: https://git.bioconductor.org/packages/singIST
RemoteRef: HEAD
RemoteSha: e4d3b80064be77d05031f4b2ec88a64391863b46
NeedsCompilation: no
Packaged: 2026-07-16 05:16:15 UTC; root
Author: Aitor Moruno-Cuenca [aut, cre] (ORCID:
    <https://orcid.org/0009-0009-8133-2552>),
  Dr. Sergio Picart-Armada [rev] (ORCID:
    <https://orcid.org/0000-0002-6426-8204>),
  Dr. Alexandre Perera-Lluna [ths] (ORCID:
    <https://orcid.org/0000-0001-6427-851X>),
  Dr. Francesc Fernández-Albert [ths] (ORCID:
    <https://orcid.org/0000-0001-5561-0701>)
Maintainer: Aitor Moruno-Cuenca <morunoaitor@gmail.com>