Package: simPIC
Version: 1.9.0
Date: 2023-02-02
Type: Package
Title: Flexible simulation of paired-insertion counts for single-cell
        ATAC-sequencing data
Authors@R: c(person("Sagrika", "Chugh", role=c("aut","cre"), 
           email = "sagrika.chugh@gmail.com", 
           comment = c(ORCID = "0000-0002-8050-5214")),
           person("Heejung","Shim", role=c("aut")),
           person("Davis","McCarthy", role=c("aut")))
Author: Sagrika Chugh [aut, cre]
        (<https://orcid.org/0000-0002-8050-5214>), Heejung Shim [aut],
        Davis McCarthy [aut]
Maintainer: Sagrika Chugh <sagrika.chugh@gmail.com>
Depends: R (>= 4.5.0), SingleCellExperiment
Imports: BiocGenerics, checkmate (>= 2.0.0), fitdistrplus, matrixStats,
        actuar, Matrix, stats, SummarizedExperiment, rlang, S4Vectors,
        GenomeInfoDb, methods, scales, scuttle, edgeR, withr
Description: simPIC is a package for simulating single-cell ATAC-seq
        count data. It provides a user-friendly, well documented
        interface for data simulation. Functions are provided for
        parameter estimation, realistic scATAC-seq data simulation, and
        comparing real and simulated datasets.
biocViews: SingleCell, ATACSeq, Software, Sequencing, ImmunoOncology,
        DataImport
License: GPL-3
Encoding: UTF-8
Suggests: bluster, ggplot2 (>= 3.4.0), knitr, rmarkdown, BiocStyle,
        testthat (>= 3.0.0), scater, scran, magick, splatter,
        VariantAnnotation, IRanges, GenomicRanges, preprocessCore
VignetteBuilder: knitr
RoxygenNote: 7.3.1
Config/testthat/edition: 3
URL: https://github.com/sagrikachugh/simPIC
BugReports: https://github.com/sagrikachugh/simPIC/issues
Config/pak/sysreqs: libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-28 10:14:21 UTC
RemoteUrl: https://github.com/bioc/simPIC
RemoteRef: HEAD
RemoteSha: 9c476fcc17e088ab54f045893b52ea9391fc77d4
NeedsCompilation: no
Packaged: 2026-05-28 18:05:34 UTC; root