Package: sigvar
Title: Quantify and visualize variability of mutational signatures
        within and across samples
Version: 0.99.8
Authors@R: c(
    person(
        "Maike", "Morrison",
        email = "maike.morrison@gmail.com",
        role = "aut",
        comment = c(ORCID = "0000-0003-0430-1401")
    ),
    person(
        "Nicolas", "Alcala",
        email = "alcalan@iarc.who.int",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0002-5961-5064")
    ),
    person(
        "Worldwide Cancer Research",
        role = "fnd",
        comment = "Grant 24-0106"
    ),
    person(
        "French Ligue Nationale Contre le Cancer",
        role = "fnd"
    ))
Description: This package allows users to import mutational signature
        attribution (a.k.a. exposure) matrices and compute, visualize,
        and test their variabilities within and across samples.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
URL: https://github.com/MaikeMorrison/sigvar
BugReports: https://github.com/MaikeMorrison/sigvar/issues
Imports: dplyr, readr, ggplot2, rlang, tidyr, stringr, ggh4x, glue,
        ggtext, ggforce, scales, GenomicFeatures, GenomeInfoDb,
        BSgenome, Biostrings, rtracklayer,
        TxDb.Hsapiens.UCSC.hg38.knownGene,
        TxDb.Mmusculus.UCSC.mm10.knownGene, lifecycle, withr
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), magick, BiocStyle,
        BSgenome.Hsapiens.UCSC.hg38, PNWColors, cowplot, ggpubr,
        ggrepel, kableExtra, lsa, patchwork, tidyverse
biocViews: Software, WholeGenome, SomaticMutation, StructuralVariation,
        StatisticalMethod, Visualization, DriverMutation, DataImport
Config/testthat/edition: 3
Depends: R (>= 4.5)
VignetteBuilder: knitr
LazyData: false
Config/roxygen2/version: 8.0.0
RoxygenNote: 8.0.0
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev make libbz2-dev
        libicu-dev libjpeg-dev liblzma-dev libpng-dev libxml2-dev
        libssl-dev libx11-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-07-17 15:43:39 UTC
RemoteUrl: https://github.com/bioc/sigvar
RemoteRef: HEAD
RemoteSha: df8143da9e725cd58035d82ef83300d8cfab1356
NeedsCompilation: no
Packaged: 2026-10-11 10:39:29 UTC; root
Author: Maike Morrison [aut] (ORCID: <https://orcid.org/0000-0003-0430-1401>),
  Nicolas Alcala [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-5961-5064>),
  Worldwide Cancer Research [fnd] (Grant 24-0106),
  French Ligue Nationale Contre le Cancer [fnd]
Maintainer: Nicolas Alcala <alcalan@iarc.who.int>