The ELBAR detection calling is described in:

  Lee S, Loo C, Prasasya R, Bartolomei M, Kohli R, Zhou W (2024).
  “Low-input and single-cell methods for Infinium DNA methylation
  BeadChips.” _Nucleic acids research_. ISSN 1362-4962,
  doi:10.1093/nar/gkae127 <https://doi.org/10.1093/nar/gkae127>.

A BibTeX entry for LaTeX users is

  @Article{lee2024input,
    title = {Low-input and single-cell methods for Infinium DNA methylation BeadChips},
    author = {Sol Moe Lee and Christian Loo and Rexxi Prasasya and Marisa Bartolomei and Rahul Kohli and Wanding Zhou},
    year = {2024},
    month = {Feb},
    journal = {Nucleic acids research},
    doi = {10.1093/nar/gkae127},
    language = {eng},
    issn = {1362-4962},
  }

Data analysis on non-standard genome is described in:

  Ding W, Kaur D, Horvath S, Zhou W (2023). “Comparative epigenome
  analysis using Infinium DNA methylation BeadChips.” _Briefings in
  bioinformatics_, *24*(1). ISSN 1477-4054, doi:10.1093/bib/bbac617
  <https://doi.org/10.1093/bib/bbac617>, 36617464.

A BibTeX entry for LaTeX users is

  @Article{BIB,
    title = {Comparative epigenome analysis using Infinium DNA methylation BeadChips},
    author = {Wubin Ding and Diljeet Kaur and Steve Horvath and Wanding Zhou},
    year = {2023},
    month = {Jan},
    journal = {Briefings in bioinformatics},
    volume = {24},
    number = {1},
    eprint = {36617464},
    doi = {10.1093/bib/bbac617},
    language = {eng},
    issn = {1477-4054},
  }

Mouse (MM285) array informatics is described in:

  Zhou W, Hinoue T, Barnes B, Mitchell O, Iqbal W, Lee SM, Foy KK, Lee
  K, Moyer EJ, VanderArk A, Koeman JM, Ding W, Kalkat M, Spix NJ,
  Eagleson B, Pospisilik JA, Szabó PE, Bartolomei MS, Schaaf NAV, Kang
  L, Wiseman AK, Jones PA, Krawczyk CM, Adams M, Porecha R, Chen BH,
  Shen H, Laird PW (2022). “DNA methylation dynamics and dysregulation
  delineated by high-throughput profiling in the mouse.” _Cell
  genomics_, *2*(7). ISSN 2666-979X, doi:10.1016/j.xgen.2022.100144
  <https://doi.org/10.1016/j.xgen.2022.100144>, 35873672.

A BibTeX entry for LaTeX users is

  @Article{MM285,
    title = {DNA methylation dynamics and dysregulation delineated by high-throughput profiling in the mouse},
    author = {Wanding Zhou and Toshinori Hinoue and Bret Barnes and Owen Mitchell and Waleed Iqbal and Sol Moe Lee and Kelly K Foy and Kwang-Ho Lee and Ethan J Moyer and Alexandra VanderArk and Julie M Koeman and Wubin Ding and Manpreet Kalkat and Nathan J Spix and Bryn Eagleson and John Andrew Pospisilik and Piroska E Szabó and Marisa S Bartolomei and Nicole A Vander Schaaf and Liang Kang and Ashley K Wiseman and Peter A Jones and Connie M Krawczyk and Marie Adams and Rishi Porecha and Brian H Chen and Hui Shen and Peter W Laird},
    year = {2022},
    month = {Jul},
    journal = {Cell genomics},
    volume = {2},
    number = {7},
    eprint = {35873672},
    doi = {10.1016/j.xgen.2022.100144},
    language = {eng},
    issn = {2666-979X},
    eprinttype = {pubmed},
  }

pOOBAH detection calling is described in:

  Zhou W, Triche TJ, Laird PW, Shen H (2018). “SeSAMe: reducing
  artifactual detection of DNA methylation by Infinium BeadChips in
  genomic deletions.” _Nucleic Acids Research_, *gky691*.
  doi:10.1093/nar/gky691 <https://doi.org/10.1093/nar/gky691>.

A BibTeX entry for LaTeX users is

  @Article{sesame,
    title = {{SeSAMe: reducing artifactual detection of DNA methylation by Infinium BeadChips in genomic deletions}},
    author = {Wanding Zhou and Timothy J. Triche and Peter W. Laird and Hui Shen},
    year = {2018},
    journal = {Nucleic Acids Research},
    volume = {gky691},
    doi = {10.1093/nar/gky691},
    pubmed = {30085201},
  }

noob background correction is described in:

  Triche TJ, Weisenberger DJ, Van Den Berg D, Laird PW, Siegmund KD
  (2013). “Low-level processing of Illumina Infinium DNA Methylation
  BeadArrays.” _Nucleic Acids Research_, *41*(7), e90.
  doi:10.1093/nar/gkt090 <https://doi.org/10.1093/nar/gkt090>.

A BibTeX entry for LaTeX users is

  @Article{noob,
    author = {Timothy J. Triche and Daniel J. Weisenberger and David {Van Den Berg} and Peter W. Laird and Kimberly D. Siegmund},
    title = {Low-level processing of {Illumina} {Infinium} {DNA} {Methylation} {BeadArrays}},
    journal = {Nucleic Acids Research},
    year = {2013},
    volume = {41},
    number = {7},
    pages = {e90},
    doi = {10.1093/nar/gkt090},
    pubmed = {23476028},
  }