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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "seq2pathway" in publications use:'
type: software
license: GPL-2.0-only
title: 'seq2pathway: a novel tool for functional gene-set (or termed as pathway) analysis
  of next-generation sequencing data'
version: 1.37.0
abstract: Seq2pathway is a novel tool for functional gene-set (or termed as pathway)
  analysis of next-generation sequencing data, consisting of "seq2gene" and "gene2path"
  components. The seq2gene links sequence-level measurements of genomic regions (including
  SNPs or point mutation coordinates) to gene-level scores, and the gene2pathway summarizes
  gene scores to pathway-scores for each sample. The seq2gene has the feasibility
  to assign both coding and non-exon regions to a broader range of neighboring genes
  than only the nearest one, thus facilitating the study of functional non-coding
  regions. The gene2pathway takes into account the quantity of significance for gene
  members within a pathway compared those outside a pathway. The output of seq2pathway
  is a general structure of quantitative pathway-level scores, thus allowing one to
  functional interpret such datasets as RNA-seq, ChIP-seq, GWAS, and derived from
  other next generational sequencing experiments.
authors:
- family-names: Kinstlick
  given-names: Arjun
  email: akinstlick@uchicago.edu
- email: binw@uchicago.edu
repository: https://bioc.r-universe.dev
date-released: '2021-11-21'
contact:
- family-names: Kinstlick
  given-names: Arjun
  email: akinstlick@uchicago.edu