Package: selectKSigs
Type: Package
Title: Selecting the number of mutational signatures using a
        perplexity-based measure and cross-validation
Depends: R(>= 3.6)
Imports: HiLDA, magrittr, gtools, methods, Rcpp
Suggests: knitr, rmarkdown, testthat, BiocStyle, ggplot2, dplyr, tidyr
Version: 1.25.0
Date: 2021-10-18
Authors@R: c(person("Zhi", "Yang", email = "zyang895@gmail.com", 
             role = c("aut", "cre")),
             person("Yuichi", "Shiraishi", email = "friend1ws@gmail.com", 
             role = "ctb"))
Description: A package to suggest the number of mutational signatures
        in a collection of somatic mutations using calculating the
        cross-validated perplexity score.
URL: https://github.com/USCbiostats/selectKSigs
BugReports: https://github.com/USCbiostats/HiLDA/selectKSigs
License: GPL-3
biocViews: Software, SomaticMutation, Sequencing, StatisticalMethod,
        Clustering
RoxygenNote: 7.1.2
LinkingTo: Rcpp
VignetteBuilder: knitr
Encoding: UTF-8
Config/pak/sysreqs: make jags libbz2-dev libicu-dev liblzma-dev
        libpng-dev libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:51:28 UTC
RemoteUrl: https://github.com/bioc/selectKSigs
RemoteRef: HEAD
RemoteSha: 12a8f024712cfa18861513f4cfaccdaac3cb571e
NeedsCompilation: yes
Packaged: 2026-06-08 07:07:57 UTC; root
Author: Zhi Yang [aut, cre],
  Yuichi Shiraishi [ctb]
Maintainer: Zhi Yang <zyang895@gmail.com>