Package: scuttle
Type: Package
Authors@R: c(
        person("Aaron", "Lun", role = c("aut", "cre"), email="infinite.monkeys.with.keyboards@gmail.com"),
        person("Davis", "McCarthy", role="aut")
    )
Version: 1.23.2
Date: 2026-08-28
License: GPL-3
Title: Legacy Utilities for Single-Cell RNA-Seq Analysis
Description: Provides some legacy utility functions for performing
        single-cell analyses. Most of these functions are deprecated in
        favor of newer, more performant alternatives. We just keep this
        package around for back-compatibility and to point to the
        replacement functions.
Depends: SingleCellExperiment
Imports: methods, utils, stats, Matrix, Rcpp, BiocGenerics, S4Vectors,
        BiocParallel, GenomicRanges, SummarizedExperiment, S4Arrays,
        MatrixGenerics, SparseArray, DelayedArray, beachmat
Suggests: BiocStyle, knitr, scRNAseq, rmarkdown, testthat,
        sparseMatrixStats, DelayedMatrixStats, scran
VignetteBuilder: knitr
biocViews: ImmunoOncology, SingleCell, RNASeq, QualityControl,
        Preprocessing, Normalization, Transcriptomics, GeneExpression,
        Sequencing, Software, DataImport
LinkingTo: Rcpp, beachmat, assorthead
URL: https://github.com/LTLA/scuttle
BugReports: https://github.com/LTLA/scuttle/issues
SystemRequirements: C++17
RoxygenNote: 7.3.3
Encoding: UTF-8
NeedsCompilation: yes
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-08-27 14:48:58 UTC
RemoteUrl: https://github.com/bioc/scuttle
RemoteRef: HEAD
RemoteSha: d3476eb0833aaa38cd59b2db3c941c38fc64677b
Packaged: 2026-10-27 07:28:10 UTC; root
Author: Aaron Lun [aut, cre],
  Davis McCarthy [aut]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>