Package: screenCounter
Version: 1.13.0
Date: 2024-12-11
Title: Counting Reads in High-Throughput Sequencing Screens
Description: Provides functions for counting reads from high-throughput
        sequencing screen data (e.g., CRISPR, shRNA) to quantify
        barcode abundance. Currently supports single barcodes in
        single- or paired-end data, and combinatorial barcodes in
        paired-end data.
Authors@R: person("Aaron", "Lun", role=c("aut", "cre"), email="infinite.monkeys.with.keyboards@gmail.com", comment = c(ORCID = "0000-0002-3564-4813"))
Depends: S4Vectors, SummarizedExperiment
Imports: Rcpp, BiocParallel
Suggests: BiocGenerics, Biostrings, BiocStyle, knitr, rmarkdown,
        testthat
LinkingTo: Rcpp
License: MIT + file LICENSE
VignetteBuilder: knitr
SystemRequirements: C++17, GNU make
BugReports: https://github.com/crisprVerse/screenCounter/issues
URL: https://github.com/crisprVerse/screenCounter
RoxygenNote: 7.3.2
Encoding: UTF-8
biocViews: CRISPR, Alignment, FunctionalGenomics, FunctionalPrediction
Config/pak/sysreqs: make zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:00:41 UTC
RemoteUrl: https://github.com/bioc/screenCounter
RemoteRef: HEAD
RemoteSha: 4a8b480e76ba62154b396f14509a7a53413ffd89
NeedsCompilation: yes
Packaged: 2026-07-04 15:56:23 UTC; root
Author: Aaron Lun [aut, cre] (ORCID: <https://orcid.org/0000-0002-3564-4813>)
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>