To cite the scoup package in publications use:

Sadiq, H.. (2024) scoup: Simulate Codon Sequences with Darwinian Selection Incorporated as an Ornstein-Uhlenbeck Process Bioconductor/R Package

Sadiq, H and Martin, DP. (2026) scoup: Simulate Codon Sequences with Darwinian Selection Incorporated as an Ornstein-Uhlenbeck Process Journal of Open Source Software 11(119) 9797<doi:10.21105/joss.09797>

Corresponding BibTeX entries:

  @Manual{,
    title = {scoup: Simulate Codon Sequences with Darwinian Selection
      Incorporated as an Ornstein-Uhlenbeck Process},
    author = {Hassan Sadiq},
    note = {Bioconductor/R Package},
    year = {2024},
    doi = {10.18129/B9.bioc.scoup},
  }

  @Article{,
    title = {scoup: Simulate Codon Sequences with Darwinian Selection
      Incorporated as an Ornstein-Uhlenbeck Process},
    author = {Hassan Sadiq and Darren P Martin},
    journal = {Journal of Open Source Software},
    year = {2026},
    volume = {11},
    number = {119},
    pages = {9797},
    doi = {10.21105/joss.09797},
  }