Package: scone Version: 1.37.0 Title: Single Cell Overview of Normalized Expression data Description: SCONE is an R package for comparing and ranking the performance of different normalization schemes for single-cell RNA-seq and other high-throughput analyses. Authors@R: c(person("Michael", "Cole", email = "mbeloc@gmail.com", role = c("aut", "cph")), person("Davide", "Risso", email = "risso.davide@gmail.com", role = c("aut", "cre", "cph")), person("Matteo", "Borella", email = "matteobor94@gmail.com", role = "ctb"), person("Chiara", "Romualdi", role = c("ctb"), email = "chiara.romualdi@gmail.com")) License: Artistic-2.0 Depends: R (>= 3.4), methods, SummarizedExperiment Imports: graphics, stats, utils, aroma.light, BiocParallel, class, cluster, compositions, diptest, edgeR, fpc, gplots, grDevices, hexbin, limma, matrixStats, mixtools, RColorBrewer, boot, rhdf5, RUVSeq, rARPACK, MatrixGenerics, SingleCellExperiment, DelayedMatrixStats, sparseMatrixStats, SparseArray (>= 1.7.6) Suggests: BiocStyle, DT, ggplot2, knitr, miniUI, NMF, plotly, reshape2, rmarkdown, scran, scRNAseq, shiny, testthat, DelayedArray, visNetwork, doParallel, batchtools, splatter, scater, kableExtra, mclust, TENxPBMCData VignetteBuilder: knitr biocViews: ImmunoOncology, Normalization, Preprocessing, QualityControl, GeneExpression, RNASeq, Software, Transcriptomics, Sequencing, SingleCell, Coverage BugReports: https://github.com/YosefLab/scone/issues RoxygenNote: 7.3.2 Encoding: UTF-8 Config/pak/sysreqs: cmake make libbz2-dev libicu-dev libjpeg-dev liblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev xz-utils zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 12:44:51 UTC RemoteUrl: https://github.com/bioc/scone RemoteRef: HEAD RemoteSha: b8833cb3b7fc751190c62006e0d3be7bab43cd81 NeedsCompilation: no Packaged: 2026-07-05 14:02:45 UTC; root Author: Michael Cole [aut, cph], Davide Risso [aut, cre, cph], Matteo Borella [ctb], Chiara Romualdi [ctb] Maintainer: Davide Risso