Package: sccomp
Type: Package
Title: Differential Composition and Variability Analysis for
        Single-Cell Data
Version: 2.5.0
Date: 2024-01-15
Authors@R: c(person("Stefano", "Mangiola", email = "stefano.mangiola@unimelb.edu.au", role = c("aut", "cre")), person("Alexandra J.", "Roth-Schulze", role = "aut"), person("Marie", "Trussart", role = "aut"), person("Enrique", "Zozaya-Valdés", role = "aut"), person("Mengyao", "Ma", role = "aut"), person("Zijie", "Gao", role = "aut"), person("Alan F.", "Rubin", role = "aut"), person("Terence P.", "Speed", role = "aut"), person("Heejung", "Shim", role = "aut"), person("Anthony T.", "Papenfuss", role = "aut"))
Description: Comprehensive R package for differential composition and
        variability analysis in single-cell RNA sequencing, CyTOF, and
        microbiome data. Provides robust Bayesian modeling with outlier
        detection, random effects, and advanced statistical methods for
        cell type proportion analysis. Features include probabilistic
        outlier identification, mixed-effect modeling, differential
        variability testing, and comprehensive visualization tools.
        Perfect for cancer research, immunology, developmental biology,
        and single-cell genomics applications.
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Depends: R (>= 4.3.0), instantiate (>= 0.2.3)
Imports: stats, boot, utils, scales, lifecycle, rlang, tidyselect,
        magrittr, crayon, cli, fansi, dplyr, tidyr, purrr, tibble,
        ggplot2, ggrepel, patchwork, forcats, readr, stringr, glue,
        SingleCellExperiment
Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0), markdown,
        loo, prettydoc, SeuratObject, tidyseurat,
        tidySingleCellExperiment, bayesplot, posterior
Additional_repositories: https://mc-stan.org/r-packages/
SystemRequirements: CmdStan
        (https://mc-stan.org/users/interfaces/cmdstan), C++14
biocViews: Bayesian, Regression, DifferentialExpression, SingleCell,
        Metagenomics, FlowCytometry, Spatial
LazyData: true
VignetteBuilder: knitr
URL: https://github.com/MangiolaLaboratory/sccomp
BugReports: https://github.com/MangiolaLaboratory/sccomp/issues
Config/testthat/edition: 3
Config/testthat/parallel: true
Config/testthat/snapshot/parallel: true
Config/testthat/snapshot/parallel/workers: 2
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libx11-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:57:30 UTC
RemoteUrl: https://github.com/bioc/sccomp
RemoteRef: HEAD
RemoteSha: 67110133c81134c0eea020eab7b916279ce23187
NeedsCompilation: no
Packaged: 2026-06-15 07:40:45 UTC; root
Author: Stefano Mangiola [aut, cre],
  Alexandra J. Roth-Schulze [aut],
  Marie Trussart [aut],
  Enrique Zozaya-Valdés [aut],
  Mengyao Ma [aut],
  Zijie Gao [aut],
  Alan F. Rubin [aut],
  Terence P. Speed [aut],
  Heejung Shim [aut],
  Anthony T. Papenfuss [aut]
Maintainer: Stefano Mangiola <stefano.mangiola@unimelb.edu.au>