Package: scanMiRApp
Type: Package
Title: scanMiR shiny application
Version: 1.19.0
Date: 2026-02-25
Authors@R: c(
    person("Pierre-Luc", "Germain", email="pierre-luc.germain@hest.ethz.ch", 
      role=c("cre","aut"), comment=c(ORCID="0000-0003-3418-4218")),
    person("Michael", "Soutschek", email="michael.soutschek@hest.ethz.ch", role="aut"),
    person("Fridolin", "Gross", email="fridolin.gross@hest.ethz.ch", role="ctb"))
Imports: AnnotationDbi, AnnotationFilter, AnnotationHub, BiocParallel,
        Biostrings, data.table, digest, DT, ensembldb, fst,
        GenomeInfoDb, GenomicFeatures, GenomicRanges, ggplot2,
        htmlwidgets, IRanges, Matrix, methods, plotly, rintrojs,
        rtracklayer, S4Vectors, scanMiRData, shiny, shinycssloaders,
        shinydashboard, shinyjqui, stats, utils, txdbmaker, waiter
Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0), shinytest,
        BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10,
        BSgenome.Mmusculus.UCSC.mm39, BSgenome.Rnorvegicus.UCSC.rn6
Description: A shiny interface to the scanMiR package. The application
        enables the scanning of transcripts and custom sequences for
        miRNA binding sites, the visualization of KdModels and binding
        results, as well as browsing predicted repression data. In
        addition contains the IndexedFst class for fast indexed reading
        of large GenomicRanges or data.frames, and some utilities for
        facilitating scans and identifying enriched miRNA-target pairs.
Depends: R (>= 4.0), scanMiR
License: GPL-3
VignetteBuilder: knitr
RoxygenNote: 7.2.3
biocViews: miRNA, SequenceMatching, GUI, ShinyApps
Config/testthat/edition: 3
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev liblzma-dev
        libpng-dev libuv1-dev libxml2-dev libssl-dev xz-utils
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:56:38 UTC
RemoteUrl: https://github.com/bioc/scanMiRApp
RemoteRef: HEAD
RemoteSha: 7b6d92e1674ff994a2320cce49f4bdb77441fd55
NeedsCompilation: no
Packaged: 2026-07-07 06:08:13 UTC; root
Author: Pierre-Luc Germain [cre, aut] (ORCID:
    <https://orcid.org/0000-0003-3418-4218>),
  Michael Soutschek [aut],
  Fridolin Gross [ctb]
Maintainer: Pierre-Luc Germain <pierre-luc.germain@hest.ethz.ch>