Package: scanMiR
Type: Package
Title: scanMiR
Version: 1.19.0
Depends: R (>= 4.0)
Date: 2025-07-24
Authors@R: c(
    person("Pierre-Luc", "Germain", email="pierre-luc.germain@hest.ethz.ch", 
            role=c("cre","aut"), comment=c(ORCID="0000-0003-3418-4218")),
    person("Michael", "Soutschek", email="michael.soutschek@hest.ethz.ch", role="aut"),
    person("Fridolin", "Gross", email="fridolin.gross@u-bordeaux.fr", role="aut"))
Imports: Biostrings, pwalign, GenomicRanges, IRanges, data.table,
        BiocParallel, methods, Seqinfo, S4Vectors, ggplot2, stats,
        stringi, utils, graphics, grid, seqLogo, cowplot
Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)
Description: A set of tools for working with miRNA affinity models
        (KdModels), efficiently scanning for miRNA binding sites, and
        predicting target repression. It supports scanning using miRNA
        seeds, full miRNA sequences (enabling 3' alignment) and
        KdModels, and includes the prediction of slicing and TDMD
        sites. Finally, it includes utility and plotting functions
        (e.g. for the visual representation of miRNA-target alignment).
License: GPL-3
VignetteBuilder: knitr
RoxygenNote: 7.3.1
biocViews: miRNA, SequenceMatching, Alignment
Config/testthat/edition: 3
Config/pak/sysreqs: libicu-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:56:30 UTC
RemoteUrl: https://github.com/bioc/scanMiR
RemoteRef: HEAD
RemoteSha: a482f71c94fea7a3c8348bc7cbcfd06f6a3ea75c
NeedsCompilation: no
Packaged: 2026-07-04 15:05:33 UTC; root
Author: Pierre-Luc Germain [cre, aut] (ORCID:
    <https://orcid.org/0000-0003-3418-4218>),
  Michael Soutschek [aut],
  Fridolin Gross [aut]
Maintainer: Pierre-Luc Germain <pierre-luc.germain@hest.ethz.ch>