Changes in version 1.13.8 o Fix multiple element that not work in dark mode. Changes in version 1.13.7 o Add dark mode switch. Changes in version 1.13.6 o Expose the database folder as a parameter. Changes in version 1.13.5 o Change some files default path. Changes in version 1.13.4 o Add Z-axis. Changes in version 1.13.3 o Replace size with linewidth for geom_segment. Changes in version 1.13.2 o Add module privilege. Changes in version 1.13.1 o Fix the bug if variable genes for seurat object not found. Changes in version 1.11.26 o Add datasets available date. Changes in version 1.11.25 o Add search link for species. Changes in version 1.11.24 o Add 'download' button for webstats. Changes in version 1.11.23 o Add 'add' and 'delete' method for lasso. Changes in version 1.11.22 o Add desity plot for sunburst and deconvolution. Changes in version 1.11.21 o Fix the issue for idconv. Changes in version 1.11.20 o Add cell deconvolution plot. Changes in version 1.11.19 o Fix a bug in molecule plot for discrete_scale. Changes in version 1.11.17 o Using coord_cartesian but not xlim/ylim. Changes in version 1.11.16 o Add molecule module. Changes in version 1.11.15 o Fix the bugs in database links. Changes in version 1.11.14 o Add pan controler and resizable divider. Changes in version 1.11.13 o fix a bug for double click events in the user mode. Changes in version 1.11.12 o save cell segmentation for Seurat object. Changes in version 1.11.11 o add help function addCellBorders, addCellLinks and addBackgroundImage. Changes in version 1.11.10 o add background plot. Changes in version 1.11.9 o add cell segmentaion plot. Changes in version 1.11.8 o remove the force gene symbol table update. Changes in version 1.11.7 o fix the bug when subset the cells by percentage. Changes in version 1.11.6 o Add xlim and ylim for cellinfo and gene exprs plot give the possibility of cross dataset comparison. Changes in version 1.11.5 o replace 'size' by 'linewidth' for element_line in theme. Changes in version 1.11.4 o Keep the height controler for interactive plot in explorer. o Add perentage filter for cell info plot. Changes in version 1.11.3 o Add apply lasso selection for explorer. Changes in version 1.11.2 o Add group B for reduction in explorer. Changes in version 1.11.1 o Add download function for lasso. Changes in version 1.9.26 o Fix the bug by sanitize the file names when load ATAC track. Changes in version 1.9.25 o add sum,max to plot type of Sunburst plot panel. Changes in version 1.9.24 o Add zoom in for plot. Changes in version 1.9.23 o Fix a bug for file accessibility check. Changes in version 1.9.22 o Add more color themes Changes in version 1.9.21 o support for dark mode Changes in version 1.9.20 o Add support for config.dcf file. Changes in version 1.9.19 o Add close and delete button for issues. Changes in version 1.9.18 o Update css for issues. Changes in version 1.9.17 o Add css for issues. Changes in version 1.9.16 o Add markdown support for issues. Changes in version 1.9.15 o Add edit and reply button for issues. Changes in version 1.9.14 o Fix the test when there is old files in the tmpfolder. Changes in version 1.9.13 o Handle the file accessibility issue. Changes in version 1.9.12 o Fix the bug if the script.js does not update. Changes in version 1.9.11 o Add issues tab. Changes in version 1.9.10 o Update the homepage to include datasets information. Changes in version 1.9.9 o Update the unit test. Changes in version 1.9.8 o Filter cells by a range of value. Changes in version 1.9.7 o Allow single gene heatmap plot. Changes in version 1.9.6 o Add progress bar for atac signal plot. Changes in version 1.9.3 o Adjust the atac peak links plot space. Changes in version 1.9.2 o Add edge links. Changes in version 1.9.1 o Fix the issue for ATAC track plot if there is no 'type' in peak annotation and no 'score' in links. Changes in version 1.7.14 o Add function extractFragmentNameMapList. Changes in version 1.7.13 o Add search for token. Changes in version 1.7.12 o Fix the token issue. Changes in version 1.7.11 o Fix the issue if the data list is not updated for the main page. Changes in version 1.7.10 o Fix multiple typos. Changes in version 1.7.9 o Update the footnote. Changes in version 1.7.8 o Remove the import of X11Fonts. Changes in version 1.7.7 o Update email address. Changes in version 1.7.6 o Add fragmentNameMap to createDataset. o Add fragmentNameMap to createDataset. Changes in version 1.7.5 o Optimize read and save ATAC peak matrix. Changes in version 1.7.4 o Add module ExplorerAcc. Changes in version 1.7.3 o check parameters before creating dataset. Changes in version 1.7.2 o add binSize parameter for atac bigwig files. Changes in version 1.7.1 o fix the bug if no signals for atac coverage and invalid filenames. Changes in version 1.5.22 o add warning message to log file when the atac bigwig files are not available. Changes in version 1.5.21 o fix a bug that counter table is not available. Changes in version 1.5.20 o Add csv format for figure data download. Changes in version 1.5.19 o Try to handle the error `Timeout was reached: [www.ncbi.nlm.nih.gov] SSL/TLS connection timeout`. Changes in version 1.5.18 o add protection of column sampleID in cell info editor funcitons. Changes in version 1.5.17 o Error handle if metadata contains '|'. o add cell info editor funcitons. Changes in version 1.5.16 o add more download format. Changes in version 1.5.15 o fix the low resolution of the plot. Changes in version 1.5.14 o fix the dotplot download issue. Changes in version 1.5.13 o add detailed fontsize and font family control. o change the dotplot from ggplot2 to complexheatmap. Changes in version 1.5.12 o order the stacked violin plots by input order. Changes in version 1.5.11 o add reorder function for splitBy for violin plots. Changes in version 1.5.10 o add color picker. o add splitBy for violin plots. o fix the issue that refresh explorer will lost the subset info. Changes in version 1.5.9 o add help video playlist. Changes in version 1.5.8 o add functionality to allow different labels for cell info. o allow subset groups for explorer. Changes in version 1.5.7 o fix the issue of reload everything when edit the cell info. Changes in version 1.5.6 o Editable cell info during login mode. o Hiden the cells when check the hidden box. Changes in version 1.5.5 o Response to the download width and height. Changes in version 1.5.4 o Access tab via query string. Changes in version 1.5.3 o Access data via data title. Changes in version 1.5.2 o Add favicon. Changes in version 1.5.1 o Fix the unique vistor counter. Changes in version 1.3.25 o Fix the abstract issue for edit module. Changes in version 1.3.24 o Update the description. Changes in version 1.3.23 o Add a hyperlink to package URL at footer. Changes in version 1.3.22 o Fix the duplicated rownames. Changes in version 1.3.21 o Add search button in the home page. Changes in version 1.3.20 o Change the default waffle plot group to celltype. Changes in version 1.3.19 o Update abstract in the admin edit tab. Changes in version 1.3.18 o Add abstract parameter for createAppConfig Changes in version 1.3.17 o Fix the issue if no ip location information available when update from the older version. o add the possibility of the feature names to replace the rownames. Changes in version 1.3.16 o Fix the missmatch UI and ID. Changes in version 1.3.15 o Fix the no id column issue when update the database. Changes in version 1.3.14 o Update the maxOptions from 6 to 50. Changes in version 1.3.13 o Add groupby parameter for correlation for proportion plot. Changes in version 1.3.12 o Add correlation for proportion plot. Changes in version 1.3.11 o Add Wilcoxon test for violin plot. Changes in version 1.3.10 o Add Chisq test for proportion. Changes in version 1.3.9 o Fix some typos. Changes in version 1.3.8 o Change dependence from hdf5r to rhdf5. Changes in version 1.3.7 o Fix the wrong downloader handler in downloader module. Changes in version 1.3.6 o Add downloader module. Changes in version 1.3.5 o Add gene name map to sql database. Changes in version 1.3.4 o Fix the issue of missing stats for cell numbers. Changes in version 1.3.3 o Add user visit info and gene symbols into the sql database. Changes in version 1.3.2 o Add dataset configuration into the sql database. Changes in version 1.3.1 o Make it compatable with SeuratObject V5. Changes in version 1.1.10 o Fix the download button for the explorer module. Changes in version 1.1.9 o Fix the repeat retreive for reference by createAppConfig. Changes in version 1.1.8 o Change the filepath for credential file. Changes in version 1.1.7 o Fix the bug in scInit for datafolder. Changes in version 1.1.6 o Fix the download button which download the fixed values. o Add multiple subset buttons. Changes in version 1.1.5 o List the available datasets by users privilege. Changes in version 1.1.4 o Fix the bug if the data is removed where user is explorering. Changes in version 1.1.3 o Fix the bug introduced by changing actionBution to checkboxInput for modBubbleHeatmap. Changes in version 1.1.2 o Add multiple layer of violin plot o Add sample order controls for stats plot Changes in version 1.1.1 o Fix the bug that `coverage` function is not imported. Changes in version 0.99.27 o Fix the subtitles for scATACseq data. Changes in version 0.99.25 o Fix a typo when fixing the chromsome name style for scATACseq data. Changes in version 0.99.24 o Add tracks for scATACseq data. Changes in version 0.99.23 o Add title for ATAC plot buttons. Changes in version 0.99.22 o Fix the issue if there is no reference. Changes in version 0.99.21 o Fix the typo for `createDataset` function. Changes in version 0.99.20 o Add zoom in and out for atac track plots. Changes in version 0.99.19 o Update the atac track plots. Changes in version 0.99.18 o Simplify the about module. Changes in version 0.99.17 o Update documentation for cellgene VIP. Changes in version 0.99.16 o fix the bug for cell index for waffleplot. Changes in version 0.99.15 o fix the bug if no reference can be retrieved. Changes in version 0.99.14 o fix the bug if no markers can be detected. Changes in version 0.99.13 o remove aes_string. Changes in version 0.99.12 o fix the dropdown names issue. Changes in version 0.99.11 o add check/uncheck all to subset cells. Changes in version 0.99.10 o fix the multiple loading. Changes in version 0.99.9 o fix the long table in vignette. Changes in version 0.99.8 o add app_path to app to fix the issue of missing files. Changes in version 0.99.6 o add ATAC plots. Changes in version 0.99.5 o Update R version dependency from 4.2.0 to 4.3.0 o remove 'CellChat', 'monocle3' and 'SeuratWrappers'. o re-organize the files in extdata to script and add documentation. o remove the `eval=FALSE` in vignettes and add `publish_folder` to scripts. o change the parameter of `cat` to `category` for `helper1` function. o remove `suppressWarnings/Messages`. o re-format the code style to fit 80 line width and 4 spaces for line indents. o add function to save ATAC peaks. Changes in version 0.99.4 o Update documentation. Changes in version 0.99.3 o Fix the heatmap donwload button. Changes in version 0.99.2 o Fix multiple notes. Changes in version 0.99.1 o Prepare for release.