Tian L, Su S, Dong X, Amann-Zalcenstein D, Biben C, Seidi A, Hilton D, Naik S, Ritchie M (2018). “scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data.” PLoS Computational Biology, 14(8), e1006361. doi:10.1371/journal.pcbi.1006361. https://doi.org/10.1371/journal.pcbi.1006361.

Amarasinghe S, Yang P, Voogd O, Yang H, Du M, Su S, Brown D, Jabbari J, Bowden R, Ritchie M (2023). “scPipe: an extended preprocessing pipeline for comprehensive single-cell ATAC-Seq data integration in R/Bioconductor.” NAR Genomics and Bioinformatics, 5(4), lqad105. ISSN 2631-9268. doi:10.1093/nargab/lqad105. https://doi.org/10.1093/nargab/lqad105.

Corresponding BibTeX entries:

  @Article{Tian2018,
    title = {scPipe: A flexible R/Bioconductor preprocessing pipeline
      for single-cell RNA-sequencing data},
    author = {Luyi Tian and Shian Su and Xueyi Dong and Daniela
      Amann-Zalcenstein and Christine Biben and Azadeh Seidi and
      Douglas J Hilton and Shalin H Naik and Matthew E Ritchie},
    journal = {PLoS Computational Biology},
    volume = {14},
    number = {8},
    pages = {e1006361},
    year = {2018},
    publisher = {Public Library of Science},
    doi = {10.1371/journal.pcbi.1006361},
    url = {https://doi.org/10.1371/journal.pcbi.1006361},
  }

  @Article{Amarasinghe2023,
    author = {Shanika L Amarasinghe and Phil Yang and Oliver Voogd and
      Haoyu Yang and Mei R M Du and Shian Su and Daniel V Brown and
      Jafar S Jabbari and Rory Bowden and Matthew E Ritchie},
    title = {scPipe: an extended preprocessing pipeline for
      comprehensive single-cell ATAC-Seq data integration in
      R/Bioconductor},
    journal = {NAR Genomics and Bioinformatics},
    volume = {5},
    number = {4},
    pages = {lqad105},
    year = {2023},
    month = {12},
    issn = {2631-9268},
    doi = {10.1093/nargab/lqad105},
    url = {https://doi.org/10.1093/nargab/lqad105},
  }