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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "scPCA" in publications use:'
type: software
license: MIT
title: 'scPCA: Sparse Contrastive Principal Component Analysis'
version: 1.19.0
abstract: A toolbox for sparse contrastive principal component analysis (scPCA) of
  high-dimensional biological data. scPCA combines the stability and interpretability
  of sparse PCA with contrastive PCA's ability to disentangle biological signal from
  unwanted variation through the use of control data. Also implements and extends
  cPCA.
authors:
- family-names: Boileau
  given-names: Philippe
  email: philippe_boileau@berkeley.edu
  orcid: https://orcid.org/0000-0002-4850-2507
- family-names: Hejazi
  given-names: Nima
  email: nh@nimahejazi.org
  orcid: https://orcid.org/0000-0002-7127-2789
preferred-citation:
  type: manual
  title: 'scPCA: Sparse contrastive principal component analysis'
  authors:
  - family-names: Boileau
    given-names: Philippe
    email: philippe_boileau@berkeley.edu
    orcid: https://orcid.org/0000-0002-4850-2507
  - family-names: Hejazi
    given-names: Nima S
  - family-names: Dudoit
    given-names: Sandrine
  year: '2020'
  url: https://bioconductor.org/scPCA
repository: https://bioc.r-universe.dev
repository-code: https://github.com/PhilBoileau/scPCA
url: https://github.com/PhilBoileau/scPCA
contact:
- family-names: Boileau
  given-names: Philippe
  email: philippe_boileau@berkeley.edu
  orcid: https://orcid.org/0000-0002-4850-2507
references:
- type: article
  title: 'scPCA: A toolbox for sparse contrastive principal component analysis in
    R'
  authors:
  - family-names: Boileau
    given-names: Philippe
  - family-names: Hejazi
    given-names: Nima S
  - family-names: Dudoit
    given-names: Sandrine
  journal: Journal of Open Source Software
  publisher:
    name: The Open Journal
  volume: '5'
  issue: '46'
  year: '2020'
  doi: 10.21105/joss.02079
  url: https://doi.org/10.21105/joss.02079
- type: article
  title: Exploring high-dimensional biological data with sparse contrastive principal
    component analysis
  authors:
  - family-names: Boileau
    given-names: Philippe
  - family-names: Hejazi
    given-names: Nima S
  - family-names: Dudoit
    given-names: Sandrine
  journal: Bioinformatics
  year: '2020'
  month: '3'
  doi: 10.1093/bioinformatics/btaa176
  url: https://doi.org/10.1093/bioinformatics/btaa176