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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "scMerge" in publications use:'
type: software
license: GPL-3.0-only
title: 'scMerge: scMerge: Merging multiple batches of scRNA-seq data'
version: 1.21.0
doi: 10.1073/pnas.1820006116
abstract: Like all gene expression data, single-cell data suffers from batch effects
  and other unwanted variations that makes accurate biological interpretations difficult.
  The scMerge method leverages factor analysis, stably expressed genes (SEGs) and
  (pseudo-) replicates to remove unwanted variations and merge multiple single-cell
  data. This package contains all the necessary functions in the scMerge pipeline,
  including the identification of SEGs, replication-identification methods, and merging
  of single-cell data.
authors:
- family-names: Lin
  given-names: Yingxin
  email: yingxin.lin@sydney.edu.au
- family-names: Wang
  given-names: Kevin
  email: kevin.wang@sydney.edu.au
preferred-citation:
  type: article
  title: scMerge leverages factor analysis, stable expression, and pseudoreplication
    to merge multiple single-cell RNA-seq datasets
  authors:
  - family-names: Lin
    given-names: Yingxin
    email: yingxin.lin@sydney.edu.au
  - family-names: Ghazanfar
    given-names: Shila
  - family-names: Wang
    given-names: Kevin
    email: kevin.wang@sydney.edu.au
  - family-names: Gagnon-Bartsch
    given-names: Johann
  - family-names: Lo
    given-names: Kitty
  - family-names: Su
    given-names: Xianbin
  - family-names: Han
    given-names: Ze-Guang
  - family-names: Ormerod
    given-names: John
  - family-names: Speed
    given-names: Terence
  - family-names: Yang
    given-names: Pengyi
  - family-names: Yang
    given-names: Jean
  year: '2019'
  journal: Proceedings of the National Academy of Sciences
  doi: 10.1073/pnas.1820006116
  url: http://www.pnas.org/lookup/doi/10.1073/pnas.1820006116
repository: https://bioc.r-universe.dev
repository-code: https://github.com/SydneyBioX/scMerge
url: https://github.com/SydneyBioX/scMerge
contact:
- family-names: Lin
  given-names: Yingxin
  email: yingxin.lin@sydney.edu.au