NEWS
scMerge 1.23.0
scMerge 0.99.24
- Updated ciation information due to PNAS acceptance.
scMerge 0.99.23
- Fixed assignment based on feedbacks
scMerge 0.99.21
- Increase code coverage to 85%.
scMerge 0.99.20
- Updated vignette on SEGs and manuals
scMerge 0.99.19
- Fixed spelling
- Added verbose option
- Code coverage at 75 percent (more tests on error handling needed)
scMerge 0.99.17
- Fixed README
install_github vignette issue.
- Fixed pkgdown organisation issue.
- Major updates on the scReplicate function: more informative messages.
- Using cross-product of matrix to perform SVD to speed up calculations.
- Added testing scripts.
- Fixed vignette text output issues.
scMerge 0.99.11
- Reduced data size in scMerge to pass BioC checks
scMerge 1.1.6
- Accepts
DelayedArray, HDF5Array and dgCMatrix inputs in the slots of input SCE objects.
- Significant speed optimisation on
scSEGIndex and add BiocParallel support.
- Updated
scSEGIndex references after publication.
scMerge now has the svd_k input that controls the number eigenvectors needed in the RUV step to allow fast approximation for large dataset.- Now using
BiocSingular to manage all SVD components.
- Now automatically remove zeroes in the rows and columns of the SCE.
scMerge 1.1.5
- Adding version restrictions on
S4Vectors and SingleCellExperiment dependent packages.
scMerge 1.1.4
plot_igraph would allow suppression of igraph output during unsupervised scMerge
scMerge 1.1.3
- Column name must be non-NULL and without duplicates
scMerge 1.1.2
- Resolved problems with only a single linking cell-type across multiple batches
scMerge 1.1.0