NEWS
scDiagnostics 1.6.0
- Renamed gene shift function for consistency (previously
calculateTopLoadingGeneShifts())
- Added gene specification parameter to
calculateGeneShifts()
- Improved
calculateGeneShifts() function, plot method, and color scheme
scDiagnostics 1.4.0
- Add functionality to process SCE objects for PCA computation via the new
processPCA() function.
- Add functionality to downsample SCE objects for diagnostic functions.
- Add new diagnostic functions (
calculateTopLoadingGeneShifts(), compareMarkers() and calculateMMDPValue()).
- Add graph integration diagnostic function in replacement of nearest neighbor diagnostic,
calculateGraphIntegration().
- Improve
regressPC() function and plot method, which can now also regress against cell types and batches.
- Improve normalization for
plotMarkerExpression() diagnostic function.
- Improve user control and options for plot methods.
- Update vignettes to reflect all new changes.
scDiagnostics 1.0.0
- Initial release of the
scDiagnostics package.