NEWS

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scDblFinder 1.19.6 (2024-09-19)

• added a dbr.per1k parameter to set doublet rates per thousands of cells, updated the default from 1 to 0.8\%
• fixed some issues stemming from the cxds score in some corner cases (absence of inverse correlation between genes)
• updated documentation

scDblFinder 1.13.14 (2023-06-19)

• reduced the default minimum number of artificial doublets to improve call robustness in very small datasets.

scDblFinder 1.13.10 (2023-03-23)

• fixed serializing error in multithreading large single samples
• computed thresholds now reported in metadata

scDblFinder 1.13.7 (2023-01-09)

• added possibility to provide the genes/features to use, updated docs

scDblFinder 1.13.4 (2022-11-21)

• fixed bug in samples reporting in split mode (doesn't affect doublets scores)

scDblFinder 1.13.3 (2022-11-20)

• updated default parameters according to https://arxiv.org/abs/2211.00772

scDblFinder 1.13.2 (2022-11-11)

• added two-pass mode for feature aggregation

scDblFinder 1.9.11 (2022-04-16)

• fixed larger kNN size

scDblFinder 1.9.9

• improved amulet reimplementation
• added clamulet and scATAC vignette

scDblFinder 1.9.1 (2021-11-02)

• added reimplementation of the amulet method for scATAC-seq

scDblFinder 1.7.3 (2021-07-26)

• scDblFinder now includes both cluster-based and random modes for artificial doublet generation
• thresholding has been streamlined
• default parameters have been optimized using benchmark datasets
• added the 'directDblClassification' method

scDblFinder 1.5.11 (2021-01-19)

• scDblFinder now provides doublet enrichment tests
• doublet generation and default parameters have been further optimized

scDblFinder 1.3.25 (2020-10-26)

• scDblFinder has important improvements on speed, robustness and accuracy
• in additional to doublet calls, scDblFinder reports the putative origin (combination of clusters) of doublets

scDblFinder 1.3.19 (2020-08-06)

• scDblFinder now hosts the doublet detection methods formerly part of 'scran'