Package: scDblFinder Type: Package Title: scDblFinder Version: 1.27.12 Authors@R: c( person("Pierre-Luc", "Germain", email="pierre-luc.germain@hest.ethz.ch", role=c("cre","aut"), comment=c(ORCID="0000-0003-3418-4218")), person("Aaron", "Lun", email="infinite.monkeys.with.keyboards@gmail.com", role="ctb")) URL: https://github.com/plger/scDblFinder, https://plger.github.io/scDblFinder/ BugReports: https://github.com/plger/scDblFinder/issues Description: The scDblFinder package gathers various methods for the detection and handling of doublets/multiplets in single-cell sequencing data (i.e. multiple cells captured within the same droplet or reaction volume). It includes methods formerly found in the scran package, the new fast and comprehensive scDblFinder method, and a reimplementation of the Amulet detection method for single-cell ATAC-seq. License: GPL-3 + file LICENSE Depends: R (>= 4.0), SingleCellExperiment Imports: igraph, Matrix, BiocGenerics, BiocParallel, BiocNeighbors, BiocSingular, rlang, S4Vectors, SummarizedExperiment, scater, scrapper, bluster, methods, DelayedArray, xgboost (>= 3.1), stats, utils, MASS, IRanges, GenomicRanges, GenomeInfoDb, Rsamtools, rtracklayer Suggests: BiocStyle, knitr, rmarkdown, testthat, scRNAseq, circlize, ComplexHeatmap, ggplot2, dplyr, viridisLite, mbkmeans VignetteBuilder: knitr Encoding: UTF-8 biocViews: Preprocessing, SingleCell, RNASeq, ATACSeq Config/roxygen2/version: 8.0.0 Config/pak/sysreqs: libglpk-dev make libbz2-dev liblzma-dev libxml2-dev libssl-dev xz-utils zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-10-14 07:53:18 UTC RemoteUrl: https://github.com/bioc/scDblFinder RemoteRef: HEAD RemoteSha: e66180a1d84733bbcf63ed8590ae75a4a5329e34 NeedsCompilation: no Packaged: 2026-11-01 13:14:51 UTC; root Author: Pierre-Luc Germain [cre, aut] (ORCID: ), Aaron Lun [ctb] Maintainer: Pierre-Luc Germain