Package: scDblFinder Type: Package Title: scDblFinder Version: 1.27.5 Authors@R: c( person("Pierre-Luc", "Germain", email="pierre-luc.germain@hest.ethz.ch", role=c("cre","aut"), comment=c(ORCID="0000-0003-3418-4218")), person("Aaron", "Lun", email="infinite.monkeys.with.keyboards@gmail.com", role="ctb")) URL: https://github.com/plger/scDblFinder, https://plger.github.io/scDblFinder/ BugReports: https://github.com/plger/scDblFinder/issues Description: The scDblFinder package gathers various methods for the detection and handling of doublets/multiplets in single-cell sequencing data (i.e. multiple cells captured within the same droplet or reaction volume). It includes methods formerly found in the scran package, the new fast and comprehensive scDblFinder method, and a reimplementation of the Amulet detection method for single-cell ATAC-seq. License: GPL-3 + file LICENSE Depends: R (>= 4.0), SingleCellExperiment Imports: igraph, Matrix, BiocGenerics, BiocParallel, BiocNeighbors, BiocSingular, S4Vectors, SummarizedExperiment, scater, scrapper, bluster, methods, DelayedArray, xgboost (>= 3.1), stats, utils, MASS, IRanges, GenomicRanges, GenomeInfoDb, Rsamtools, rtracklayer Suggests: BiocStyle, knitr, rmarkdown, testthat, scRNAseq, circlize, ComplexHeatmap, ggplot2, dplyr, viridisLite, mbkmeans VignetteBuilder: knitr Encoding: UTF-8 biocViews: Preprocessing, SingleCell, RNASeq, ATACSeq Config/roxygen2/version: 8.0.0 Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev libfribidi-dev libglpk-dev make libharfbuzz-dev libbz2-dev libicu-dev libjpeg-dev liblzma-dev libpng-dev libtiff-dev libwebp-dev libxml2-dev libssl-dev xz-utils zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-06-23 07:26:02 UTC RemoteUrl: https://github.com/bioc/scDblFinder RemoteRef: HEAD RemoteSha: bf2046c708a9da5f2c28202fe2c5d5512fbd2210 NeedsCompilation: no Packaged: 2026-06-23 16:39:43 UTC; root Author: Pierre-Luc Germain [cre, aut] (ORCID: ), Aaron Lun [ctb] Maintainer: Pierre-Luc Germain