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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "scBatchQC" in publications use:'
type: software
license: MIT
title: 'scBatchQC: Batch-Aware Cell Quality Control for Single-Cell RNA-seq'
version: 0.99.3
abstract: scBatchQC provides a hierarchical empirical Bayes framework for quality
  control in multi-sample, multi-batch single-cell RNA-seq experiments. Unlike per-sample
  QC tools, scBatchQC jointly models QC metric distributions (library size, gene count,
  mitochondrial fraction) and doublet rates across batches, enabling calibrated cell-level
  QC calls that account for batch structure. The package operates natively on SingleCellExperiment
  objects and returns augmented colData with per-cell QC flags and batch-adjusted
  doublet scores.
authors:
- family-names: Jana
  given-names: Subhadip
  email: subhadipjana1409@gmail.com
  orcid: https://orcid.org/0009-0003-7860-2853
repository: https://bioc.r-universe.dev
repository-code: https://github.com/SubhadipJana1409/scBatchQC
commit: 9f8df9af73e1bbd2bd56d2d2e0772d357246652a
url: https://github.com/SubhadipJana1409/scBatchQC
date-released: '2026-06-08'
contact:
- family-names: Jana
  given-names: Subhadip
  email: subhadipjana1409@gmail.com
  orcid: https://orcid.org/0009-0003-7860-2853