NEWS
scBatchQC 0.99.3
Bug fixes
- Improve overall stability.
scBatchQC 0.99.2
Bug fixes
- Improve overall stability.
scBatchQC 0.99.1
Bug fixes
- Updated R version dependency from 4.5.0 to 4.6.0 to match Bioconductor 3.23.
- Replaced deprecated
scuttle::perCellQCMetrics() usage with
scrapper::computeRnaQcMetrics(), removing deprecation warnings from the
test suite while preserving existing scBatchQC_* output column names.
- Updated generated imports and dependency metadata for the new
scrapper
QC metric backend.
scBatchQC 0.99.0
New features
- Initial release submitted to Bioconductor.
batchAwareQCMetrics(): compute per-cell QC metrics with hierarchical
empirical Bayes batch harmonization.
estimateBatchDoubletRate(): estimate per-batch doublet rates from
cells-loaded metadata and protocol type.
harmonizeQCThresholds(): inspect and update QC thresholds at arbitrary
MAD stringency without re-running the full pipeline.
plotBatchQC(): violin plot panel of QC metric distributions per batch
with harmonized threshold overlays.
BQCResult S4 class for storing batch QC results.