Package: scBatchQC
Type: Package
Title: Batch-Aware Cell Quality Control for Single-Cell RNA-seq
Version: 0.99.3
Authors@R: c(
    person("Subhadip", "Jana", role = c("aut", "cre"),
           email = "subhadipjana1409@gmail.com",
           comment = c(ORCID = "0009-0003-7860-2853")))
Description: scBatchQC provides a hierarchical empirical Bayes
        framework for quality control in multi-sample, multi-batch
        single-cell RNA-seq experiments. Unlike per-sample QC tools,
        scBatchQC jointly models QC metric distributions (library size,
        gene count, mitochondrial fraction) and doublet rates across
        batches, enabling calibrated cell-level QC calls that account
        for batch structure. The package operates natively on
        SingleCellExperiment objects and returns augmented colData with
        per-cell QC flags and batch-adjusted doublet scores.
License: MIT + file LICENSE
URL: https://github.com/SubhadipJana1409/scBatchQC
BugReports: https://github.com/SubhadipJana1409/scBatchQC/issues
biocViews: SingleCell, QualityControl, BatchEffect, StatisticalMethod,
        Transcriptomics, GeneExpression, CellBasedAssays, Sequencing,
        WorkflowStep
Encoding: UTF-8
Depends: R (>= 4.5.0)
Imports: SingleCellExperiment, SummarizedExperiment, BiocParallel,
        scrapper, methods, stats, S4Vectors, ggplot2, rlang
Suggests: scDblFinder, BiocStyle, knitr, rmarkdown, testthat (>=
        3.0.0), TENxPBMCData, withr
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-06-08 07:03:56 UTC
RemoteUrl: https://github.com/bioc/scBatchQC
RemoteRef: HEAD
RemoteSha: 9f8df9af73e1bbd2bd56d2d2e0772d357246652a
NeedsCompilation: no
Packaged: 2026-06-28 11:13:32 UTC; root
Author: Subhadip Jana [aut, cre] (ORCID:
    <https://orcid.org/0009-0003-7860-2853>)
Maintainer: Subhadip Jana <subhadipjana1409@gmail.com>