Package: sagenhaft
Version: 1.83.0
Date: 2020-01-10
Title: Collection of functions for reading and comparing SAGE libraries
Author: Tim Beissbarth <tim.beissbarth@bioinf.med.uni-goettingen.de>,
        with contributions from Gordon Smyth <smyth@wehi.edu.au>
Reference: Beissbarth T, Hyde L, Smyth GK, Job C, Boon WM, Tan SS,
        Scott HS, Speed TP: Statistical modeling of sequencing errors
        in SAGE libraries, Bioinformatics, 2004 20(Suppl. 1):i31-9.
Maintainer: Tim Beissbarth
 <tim.beissbarth@bioinf.med.uni-goettingen.de>
Depends: R (>= 2.10), SparseM (>= 0.73), methods
Imports: graphics, stats, utils
Description: This package implements several functions useful for
        analysis of gene expression data by sequencing tags as done in
        SAGE (Serial Analysis of Gene Expressen) data, i.e. extraction
        of a SAGE library from sequence files, sequence error
        correction, library comparison. Sequencing error correction is
        implementing using an Expectation Maximization Algorithm based
        on a Mixture Model of tag counts.
biocViews: SAGE
License: GPL (>= 2)
URL: http://www.bioinf.med.uni-goettingen.de
git_url: https://git.bioconductor.org/packages/sagenhaft
git_branch: RELEASE_3_10
git_last_commit: c49299a
git_last_commit_date: 2019-10-29
NeedsCompilation: no
Packaged: 2026-05-30 09:49:01 UTC; root
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:30:52 UTC
RemoteUrl: https://github.com/bioc/sagenhaft
RemoteRef: HEAD
RemoteSha: 94c3e809d27075e9143f7d5ddcaaf60e80bdd98c