NEWS

---

sSNAPPY 1.4.4 (2023-10-09)

• Remove databases that are no longer supported: pathbank, panther, pharmgkb, smpdb

sSNAPPY 1.4.3 (2023-07-31)

• Updated the perturbation scoring step to account for the orientiaton of topology matrices for KEGG pathways (row - Downstream genes; column - Upstream genes)
• Add prefix parameter to the weight_ss_fc function to allow user-specified prefix that are other than "ENTREZID:"

sSNAPPY 1.4.2 (2023-07-12)

• Updated the permtuation strategy so that the generate_permuted_scores function now construct all possible permuted pairs by default
• Updated the plot_community function so KEGG pathways that are not assigned to categories will be ignored in community labeling

sSNAPPY 1.1.0 (2022-06-27)

• Fixed a few typos

sSNAPPY 1.0.3 (2022-11-24)

• Replaced compute_perturbation_score with raw_gene_pert, path_gene_per and rank_gene_pert to allow the scoring of gene-wise perturbation
• Added 3 new visualisation functions: plot_gene_contribution, plot_community and plot_gs2gene
• Demonstrated the use of new functions in the updated version of vignette

sSNAPPY 1.0.2 (2022-08-03)

• Fixed a missing column name problems in weight_ss_fc

sSNAPPY 0.99.0 (2022-03-28)

• Submitted to Bioconductor