Changes in version 1.21.3 o Add new parameter to keep in the output of `calculateSimMatrix()` terms without Information Content (IC) (reported by GitHub user savagedude3. Thank you!) o Fixed warning calling `calculateSimMatrix()` with default value for the `semdata` parameter (accurately detailed by GitHub user lahuuki. Thank you!) Changes in version 1.21.1 o Add warning when using children=TRUE in `reduceSimMatrix()` and no keytype named GOALL in the Orgdb object Changes in version 1.10.2 o Welcome two important contributions by Sara Elmeligy! Sara implemented the uniqueness and dispensability terms o `reducedSimMatrix()` outputs now the uniqueness and dispensability terms o The column termDispensability replaces the current parentSimScore. They're equivalent o `reducedSimMatrix()` now defaults to using the "uniqueness" if no vector of scores are provided o Some minor fixes Changes in version 1.10.1 o Add citation to microPublication Biology Changes in version 1.8.1 o New features in scatterPlot(): - dimensionality reduction with UMAP - plot only parents o Fix picking the right point size in scatterPlot() o Improve vignette Changes in version 1.7.1 o Deprecate org.Pf.plasmo.db Changes in version 1.5.4 o `scatterPlot()` doesn't warn anymore that we're using a deprecated parm to remove the guide Changes in version 1.5.1 o `calculateSimMatrix()` now allows using arbitrary keys from Orgdb packages. Credit: illumination-k. Thanks! Changes in version 1.3.1 o Bug fix for obsolete GO terms Changes in version 1.2.1 o allow alternative keytypes in custom OrgDB objects Changes in version 1.1.3 o Warn user when no scores are provided and thus falling back to term's size as the score to rank terms Changes in version 1.1.2 o Fix bug that would break `reduceSimMatrix()` when no scores were provided Changes in version 0.99.1 o First release to Bioconductor