NEWS

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rrvgo 1.10.2

• Welcome two important contributions by Sara Elmeligy! Sara implemented the uniqueness and dispensability terms
• 'reducedSimMatrix()' outputs now the uniqueness and dispensability terms
• The column termDispensability replaces the current parentSimScore. They're equivalent
• 'reducedSimMatrix()' now defaults to using the "uniqueness" if no vector of scores are provided
• Some minor fixes

rrvgo 1.10.1

• Add citation to microPublication Biology

rrvgo 1.8.1

• New features in scatterPlot(): - dimensionality reduction with UMAP - plot only parents
• Fix picking the right point size in scatterPlot()
• Improve vignette

rrvgo 1.7.1

• Deprecate org.Pf.plasmo.db

rrvgo 1.5.4

• ‘scatterPlot()' doesn’t warn anymore that we're using a deprecated parm to remove the guide

rrvgo 1.5.1

• 'calculateSimMatrix()' now allows using arbitrary keys from Orgdb packages. Credit: illumination-k. Thanks!

rrvgo 1.3.1

• Bug fix for obsolete GO terms

rrvgo 1.2.1

• allow alternative keytypes in custom OrgDB objects

rrvgo 1.1.3

• Warn user when no scores are provided and thus falling back to term's size as the score to rank terms

rrvgo 1.1.2

• Fix bug that would break 'reduceSimMatrix()' when no scores were provided

rrvgo 0.99.1

• First release to Bioconductor