Package: roastgsa Type: Package Version: 1.11.0 Date: 2023-06-13 Title: Rotation based gene set analysis Authors@R: person("Adria", "Caballe", email = "adria.caballe@irbbarcelona.org",role = c("aut", "cre"), comment = c(ORCID = "0000-0002-2388-4713")) BugReports: https://github.com/adricaba/roastgsa/issues Description: This package implements a variety of functions useful for gene set analysis using rotations to approximate the null distribution. It contributes with the implementation of seven test statistic scores that can be used with different goals and interpretations. Several functions are available to complement the statistical results with graphical representations. Encoding: UTF-8 VignetteBuilder: knitr biocViews: Microarray, Preprocessing, Normalization, GeneExpression, Survival, Transcription, Sequencing, Transcriptomics, Bayesian, Clustering, Regression, RNASeq, MicroRNAArray, mRNAMicroarray, FunctionalGenomics, SystemsBiology, ImmunoOncology, DifferentialExpression, GeneSetEnrichment, BatchEffect, MultipleComparison, QualityControl, TimeCourse, Metabolomics, Proteomics, Epigenetics, Cheminformatics, ExonArray, OneChannel, TwoChannel, ProprietaryPlatforms, CellBiology, BiomedicalInformatics, AlternativeSplicing, DifferentialSplicing, DataImport, Pathways Depends: R (>= 4.3.0) Imports: parallel, grDevices, graphics, utils, stats, methods, grid, RColorBrewer, gplots, ggplot2, limma, Biobase Suggests: BiocStyle, knitr, rmarkdown, GSEABenchmarkeR, EnrichmentBrowser, preprocessCore, DESeq2 License: GPL-3 Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 13:01:18 UTC RemoteUrl: https://github.com/bioc/roastgsa RemoteRef: HEAD RemoteSha: 095e6cc764d8e023e6c3899e52b235f3f02ab5b4 NeedsCompilation: no Packaged: 2026-07-04 10:43:34 UTC; root Author: Adria Caballe [aut, cre] (ORCID: ) Maintainer: Adria Caballe