NEWS

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roar 1.15.2

• Updated the vignette with a new url for gtf files
• ranges() for Hits -> overlapsRanges()

roar 1.9.1

• Updated the vignette with some details about overlapping gene features

roar 1.7.6

BUG FIXES

• Now correcly using only reads falling on PRE portions in methods countResults and fpkmResults also for RoarDatasetMultipleAPA objects.

roar 1.7.2

• New code to efficiently consider more than a single APA foreach gene - under active development (man pages, vignettes and UnitTests are being updated)
• Tests now performed with testthat BUG FIXES
• No changes classified as 'bug fixes'

roar 1.7.1

NEW FEATURES

• Now the gtf can contain an attribute that represents the lengths of PRE and POST portions on the transcriptome. If this is omitted the lengths on the genome are used (like before). Note that right now every gtf entry (or none of them) should have it.

BUG FIXES

• No changes classified as 'bug fixes'

roar 1.1.2

NEW FEATURES

• New code to deal with experimental setups with a natural pairing between treatment and control samples. The user have to define the pairings and the resulting p-values of the independent tests are combined with the Fisher method. A method that corrects these p-values (and also those obtained in single samples settings) considering the multiple testing issue has also been added.

BUG FIXES

• No changes classified as 'bug fixes'

roar 0.99.6

NEW FEATURES

• No new features, just adopted the suggested format for the NEWS file

BUG FIXES

• No changes classified as 'bug fixes'