Package: rnaseqDTU
Title: RNA-seq workflow for differential transcript usage following
        Salmon quantification
Version: 1.33.0
Date: 2018-06-27
Authors@R: c(person(role=c("aut", "cre"), "Michael", "Love", email = "michaelisaiahlove@gmail.com"),
             person(role=c("aut"), "Charlotte", "Soneson"),
             person(role=c("aut"), "Rob", "Patro"))
Description: RNA-seq workflow for differential transcript usage (DTU)
        following Salmon quantification. This workflow uses
        Bioconductor packages tximport, DRIMSeq, and DEXSeq to perform
        a DTU analysis on simulated data. It also shows how to use
        stageR to perform two-stage testing of DTU, a statistical
        framework to screen at the gene level and then confirm which
        transcripts within the significant genes show evidence of DTU.
Depends: R (>= 3.5.0), DRIMSeq, DEXSeq, stageR, DESeq2, edgeR, rafalib,
        devtools
License: Artistic-2.0
LazyData: true
VignetteBuilder: knitr
biocViews: Workflow, GeneExpressionWorkflow, ImmunoOncologyWorkflow
Suggests: knitr, rmarkdown
NeedsCompilation: no
URL: https://github.com/thelovelab/rnaseqDTU/
Workflow: TRUE
RoxygenNote: 6.0.1
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev git make libharfbuzz-dev libbz2-dev libgit2-dev
        libicu-dev libjpeg-dev liblzma-dev libpng-dev libtiff-dev
        libuv1-dev libwebp-dev libxml2-dev libssl-dev libx11-dev
        xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:43:26 UTC
RemoteUrl: https://github.com/bioc/rnaseqDTU
RemoteRef: HEAD
RemoteSha: 1c1db861258ac29e2988a912901dece0054c6203
Packaged: 2026-10-31 12:08:42 UTC; root
Author: Michael Love [aut, cre],
  Charlotte Soneson [aut],
  Rob Patro [aut]
Maintainer: Michael Love <michaelisaiahlove@gmail.com>