Package: rifiComparative Title: 'rifiComparative' compares the output of rifi from two different conditions. Version: 1.13.0 Authors@R: c(person("Loubna", "Youssar", email = "lyoussar@gmail.com", role = c("aut", "cre")), person("Jens", "Georg", email = "jens.georg@biologie.uni-freiburg.de", role = "aut", "cre")) Description: 'rifiComparative' is a continuation of rifi package. It compares two conditions output of rifi using half-life and mRNA at time 0 segments. As an input for the segmentation, the difference between half-life of both condtions and log2FC of the mRNA at time 0 are used. The package provides segmentation, statistics, summary table, fragments visualization and some additional useful plots for further anaylsis. Depends: R (>= 4.2) Imports: cowplot, doMC, parallel, dplyr, egg, foreach, ggplot2, ggrepel, graphics, grDevices, grid, methods, nnet, rlang, S4Vectors, scales, stats, stringr, tibble, rtracklayer, utils, writexl, DTA, LSD, reshape2, devtools, SummarizedExperiment Suggests: DescTools, knitr, rmarkdown, BiocStyle VignetteBuilder: knitr biocViews: RNASeq, DifferentialExpression, GeneRegulation, Transcriptomics, Microarray, Software BugReports: https://github.com/CyanolabFreiburg/rifiComparative Config/Bioconductor/UnsupportedPlatforms: windows License: GPL-3 + file LICENSE Encoding: UTF-8 Roxygen: list(markdown = TRUE) RoxygenNote: 7.2.3 Language: en-US Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev libfribidi-dev git make libharfbuzz-dev libbz2-dev libgit2-dev libicu-dev libjpeg-dev liblzma-dev libpng-dev libtiff-dev libuv1-dev libwebp-dev libxml2-dev libssl-dev libx11-dev xz-utils zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 12:59:40 UTC RemoteUrl: https://github.com/bioc/rifiComparative RemoteRef: HEAD RemoteSha: 19caa925edcdf5fe0af65f41ca2a9bba8fe35c53 NeedsCompilation: no Packaged: 2026-07-04 20:59:52 UTC; root Author: Loubna Youssar [aut, cre], Jens cre Georg [aut] Maintainer: Loubna Youssar