To cite package ‘riboSeqR’ in publications use:

  Hardcastle, J T (2024). _Analysis of sequencing data from ribosome
  profiling experiments_. doi:10.18129/B9.bioc.riboSeqR
  <https://doi.org/10.18129/B9.bioc.riboSeqR>,
  https://github.com/SamGG/riboSeqR/riboSeqR - R package version
  1.39.0, <http://www.bioconductor.org/packages/riboSeqR>.

A BibTeX entry for LaTeX users is

  @Manual{,
    title = {Analysis of sequencing data from ribosome profiling experiments},
    author = {{Hardcastle} and Thomas J},
    year = {2024},
    url = {http://www.bioconductor.org/packages/riboSeqR},
    note = {https://github.com/SamGG/riboSeqR/riboSeqR - R package version 1.39.0},
    doi = {10.18129/B9.bioc.riboSeqR},
  }

  Chung, Y. B, Hardcastle, J. T, Jones, D. J, Irigoyen, N., Firth, E.
  A, Baulcombe, C. D, Brierley, I. (2015). “The use of duplex-specific
  nuclease in ribosome profiling and a user-friendly software package
  for Ribo-seq data analysis.” _RNA_, *21*(10), 1731-1745.
  doi:10.1261/rna.052548.115 <https://doi.org/10.1261/rna.052548.115>,
  <https://rnajournal.cshlp.org/content/21/10/1731>.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {{{T}he use of duplex-specific nuclease in ribosome profiling and a user-friendly software package for {R}ibo-seq data analysis}},
    author = {{Chung} and B. Y. and {Hardcastle} and T. J. and {Jones} and J. D. and {Irigoyen} and {N.} and {Firth} and A. E. and {Baulcombe} and D. C. and {Brierley} and {I.}},
    journal = {RNA},
    year = {2015},
    volume = {21},
    number = {10},
    pages = {1731--1745},
    month = {Oct},
    doi = {10.1261/rna.052548.115},
    url = {https://rnajournal.cshlp.org/content/21/10/1731},
  }