Hardcastle, J T (2026). Analysis of sequencing data from ribosome profiling experiments. doi:10.18129/B9.bioc.riboSeqR. https://github.com/SamGG/riboSeqR/riboSeqR - R package version 1.47.0, http://www.bioconductor.org/packages/riboSeqR.

Chung, Y. B, Hardcastle, J. T, Jones, D. J, Irigoyen, N., Firth, E. A, Baulcombe, C. D, Brierley, I. (2015). “The use of duplex-specific nuclease in ribosome profiling and a user-friendly software package for Ribo-seq data analysis.” RNA, 21(10), 1731–1745. doi:10.1261/rna.052548.115. https://rnajournal.cshlp.org/content/21/10/1731.

Corresponding BibTeX entries:

  @Manual{,
    title = {Analysis of sequencing data from ribosome profiling
      experiments},
    author = {{Hardcastle} and Thomas J},
    year = {2026},
    url = {http://www.bioconductor.org/packages/riboSeqR},
    note = {https://github.com/SamGG/riboSeqR/riboSeqR - R package
      version 1.47.0},
    doi = {10.18129/B9.bioc.riboSeqR},
  }

  @Article{,
    title = {{{T}he use of duplex-specific nuclease in ribosome
      profiling and a user-friendly software package for {R}ibo-seq
      data analysis}},
    author = {{Chung} and B. Y. and {Hardcastle} and T. J. and {Jones}
      and J. D. and {Irigoyen} and {N.} and {Firth} and A. E. and
      {Baulcombe} and D. C. and {Brierley} and {I.}},
    journal = {RNA},
    year = {2015},
    volume = {21},
    number = {10},
    pages = {1731--1745},
    month = {Oct},
    doi = {10.1261/rna.052548.115},
    url = {https://rnajournal.cshlp.org/content/21/10/1731},
  }