Stamm K, Tomita-Mitchell A, Bozdag S (2019). “GSEPD: a Bioconductor package for RNA-seq gene set enrichment and projection display.” BMC Bioinformatics, 20(1), 115. ISSN 1471-2105. doi:10.1186/s12859-019-2697-5. R package version 1.45.0, https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2697-5.

Corresponding BibTeX entry:

  @Article{Stamm2019,
    title = {GSEPD: a Bioconductor package for RNA-seq gene set
      enrichment and projection display},
    author = {Karl Stamm and Aoy Tomita-Mitchell and Serdar Bozdag},
    year = {2019},
    note = {R package version 1.45.0},
    doi = {10.1186/s12859-019-2697-5},
    journal = {BMC Bioinformatics},
    publisher = {Springer Nature},
    volume = {20},
    number = {1},
    pages = {115},
    issn = {1471-2105},
    abstract = {RNA-seq, wherein RNA transcripts expressed in a sample
      are sequenced and quantified, has become a widely used technique
      to study disease and development. With RNA-seq, transcription
      abundance can be measured, differential expression genes between
      groups and functional enrichment of those genes can be computed.
      However, biological insights from RNA-seq are often limited by
      computational analysis and the enormous volume of resulting data,
      preventing facile and meaningful review and interpretation of
      gene expression profiles. Particularly, in cases where the
      samples under study exhibit uncontrolled variation, deeper
      analysis of functional enrichment would be necessary to visualize
      samples' gene expression activity under each biological
      function.},
    url =
      {https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2697-5},
  }