Package: regioneR
Type: Package
Title: Association analysis of genomic regions based on permutation
        tests
Version: 1.45.2
Date: 2026-10-29
Authors@R: c(
    person(given = "Anna", family = "Diez-Villanueva", email = "adiez@iconcologia.net",
        role = c("aut"),
        comment = c(ORCID= "0000-0002-1696-5523")),
    person(given = "Roberto", family = "Malinverni", email = "roberto.malinverni@gmail.com",
        role = c("aut"),
        comment = c(ORCID = "0000-0002-0113-3417")),
    person(given = "Bernat", family = "Gel", role = c("aut", "cre"), email = "bgel@igtp.cat",
        comment = c(ORCID = "0000-0001-8878-349X"))
    )
Description: regioneR offers a statistical framework based on
        customizable permutation tests to assess the association
        between genomic region sets and other genomic features.
License: Artistic-2.0
Depends: GenomicRanges
Imports: memoise, IRanges, BSgenome, Biostrings, rtracklayer, parallel,
        graphics, stats, utils, methods, Seqinfo, GenomeInfoDb,
        S4Vectors, tools
Suggests: BiocStyle, knitr, rmarkdown,
        BSgenome.Hsapiens.UCSC.hg19.masked, testthat
VignetteBuilder: knitr
Encoding: UTF-8
URL: https://github.com/bernatgel/regioneR
BugReports: https://github.com/bernatgel/regioneR/issues
biocViews: Genetics, ChIPSeq, DNASeq, MethylSeq, CopyNumberVariation
NeedsCompilation: no
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: make libbz2-dev liblzma-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-10-29 15:20:34 UTC
RemoteUrl: https://github.com/bioc/regioneR
RemoteRef: HEAD
RemoteSha: 4337700a8f1dbd850ae4ed463e774ca237df013e
Packaged: 2026-10-30 02:10:49 UTC; root
Author: Anna Diez-Villanueva [aut] (ORCID:
    <https://orcid.org/0000-0002-1696-5523>),
  Roberto Malinverni [aut] (ORCID:
    <https://orcid.org/0000-0002-0113-3417>),
  Bernat Gel [aut, cre] (ORCID: <https://orcid.org/0000-0001-8878-349X>)
Maintainer: Bernat Gel <bgel@igtp.cat>