Package: regionalpcs
Title: Summarizing Regional Methylation with Regional Principal
        Components Analysis
Version: 1.11.0
Authors@R: 
    person("Tiffany", "Eulalio", , "tyeulalio@gmail.com", 
           role = c("aut", "cre"), 
           comment = c(ORCID = "0000-0002-7084-9646"))
Description: Functions to summarize DNA methylation data using regional
        principal components. Regional principal components are
        computed using principal components analysis within genomic
        regions to summarize the variability in methylation levels
        across CpGs. The number of principal components is chosen using
        either the Marcenko-Pasteur or Gavish-Donoho method to identify
        relevant signal in the data.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
URL: https://github.com/tyeulalio/regionalpcs
BugReports: https://github.com/tyeulalio/regionalpcs/issues
biocViews: DNAMethylation, DifferentialMethylation, StatisticalMethod,
        Software, MethylationArray
Imports: dplyr, PCAtools, tibble, GenomicRanges
Suggests: knitr, rmarkdown, RMTstat, testthat (>= 3.0.0), BiocStyle,
        tidyr, minfiData, TxDb.Hsapiens.UCSC.hg19.knownGene, IRanges
Config/testthat/edition: 3
VignetteBuilder: knitr
Depends: R (>= 4.3.0)
Config/pak/sysreqs: libicu-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:01:53 UTC
RemoteUrl: https://github.com/bioc/regionalpcs
RemoteRef: HEAD
RemoteSha: 15c6b22aeba5a1b4a082eef32f3293eaef7f6893
NeedsCompilation: no
Packaged: 2026-07-04 06:34:20 UTC; root
Author: Tiffany Eulalio [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7084-9646>)
Maintainer: Tiffany Eulalio <tyeulalio@gmail.com>