# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "regionReport" in publications use:'
type: software
license: Artistic-2.0
title: 'regionReport: Generate HTML or PDF reports for a set of genomic regions or
  DESeq2/edgeR results'
version: 1.39.0
doi: 10.12688/f1000research.6379.2
abstract: Generate HTML or PDF reports to explore a set of regions such as the results
  from annotation-agnostic expression analysis of RNA-seq data at base-pair resolution
  performed by derfinder. You can also create reports for DESeq2 or edgeR results.
authors:
- family-names: Collado-Torres
  given-names: Leonardo
  email: lcolladotor@gmail.com
  orcid: https://orcid.org/0000-0003-2140-308X
- family-names: Jaffe
  given-names: Andrew E.
  email: andrew.jaffe@libd.org
  orcid: https://orcid.org/0000-0001-6886-1454
- family-names: Leek
  given-names: Jeffrey T.
  email: jtleek@gmail.com
  orcid: https://orcid.org/0000-0002-2873-2671
preferred-citation:
  type: article
  title: 'regionReport: Interactive reports for region-level and feature-level genomic
    analyses [version2; referees: 2 approved, 1 approved with reservations]'
  authors:
  - family-names: Collado-Torres
    given-names: Leonardo
    email: lcolladotor@gmail.com
    orcid: https://orcid.org/0000-0003-2140-308X
  - family-names: Jaffe
    given-names: Andrew E.
    email: andrew.jaffe@libd.org
    orcid: https://orcid.org/0000-0001-6886-1454
  - family-names: Leek
    given-names: Jeffrey T.
    email: jtleek@gmail.com
    orcid: https://orcid.org/0000-0002-2873-2671
  journal: F1000Research
  year: '2016'
  doi: 10.12688/f1000research.6379.2
  url: http://f1000research.com/articles/4-105/v2
  volume: '4'
  start: '105'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/leekgroup/regionReport
url: https://support.bioconductor.org/t/regionReport/
date-released: '2021-11-22'
contact:
- family-names: Collado-Torres
  given-names: Leonardo
  email: lcolladotor@gmail.com
  orcid: https://orcid.org/0000-0003-2140-308X
references:
- type: article
  title: Flexible expressed region analysis for RNA-seq with derfinder
  authors:
  - family-names: Collado-Torres
    given-names: Leonardo
  - family-names: Nellore
    given-names: Abhinav
  - family-names: Frazee
    given-names: Alyssa C.
  - family-names: Wilks
    given-names: Christopher
  - family-names: Love
    given-names: Michael I.
  - family-names: Langmead
    given-names: Ben
  - family-names: Irizarry
    given-names: Rafael A.
  - family-names: Leek
    given-names: Jeffrey T.
  - family-names: Jaffe
    given-names: Andrew E.
  year: '2017'
  journal: Nucl. Acids Res.
  doi: 10.1093/nar/gkw852
  url: http://nar.oxfordjournals.org/content/early/2016/09/29/nar.gkw852
- type: manual
  title: 'regionReport: Generate HTML or PDF reports for a set of genomic regions
    or DESeq2/edgeR results'
  authors:
  - family-names: Collado-Torres
    given-names: Leonardo
  - family-names: Jaffe
    given-names: Andrew E.
  - family-names: Leek
    given-names: Jeffrey T.
  year: '2017'
  url: http://www.bioconductor.org/packages/regionReport
  notes: https://github.com/leekgroup/regionReport - R package version 1.39.0
  doi: 10.18129/B9.bioc.regionReport