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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "recountmethylation" in publications use:'
type: software
license: Artistic-2.0
title: 'recountmethylation: Access and analyze public DNA methylation array data compilations'
version: 1.15.0
doi: 10.1093/nargab/lqab025
abstract: Resources for cross-study analyses of public DNAm array data from NCBI GEO
  repo, produced using Illumina's Infinium HumanMethylation450K (HM450K) and MethylationEPIC
  (EPIC) platforms. Provided functions enable download, summary, and filtering of
  large compilation files. Vignettes detail background about file formats, example
  analyses, and more. Note the disclaimer on package load and consult the main manuscripts
  for further info.
authors:
- family-names: Maden
  given-names: Sean K
  email: maden@ohsu.edu
  orcid: https://orcid.org/0000-0002-2212-4894
- family-names: Walsh
  given-names: Brian
  email: walsbr@ohsu.edu
  orcid: https://orcid.org/0000-0003-0913-1528
- family-names: Ellrott
  given-names: Kyle
  email: kellrott@gmail.com
  orcid: https://orcid.org/0000-0002-6573-5900
- family-names: Hansen
  given-names: Kasper D
  email: hansen@jhsph.edu
  orcid: https://orcid.org/0000-0003-0086-0687
- family-names: Thompson
  given-names: Reid F
  orcid: https://orcid.org/0000-0003-3661-5296
- family-names: Nellore
  given-names: Abhinav
  email: nellore@ohsu.edu
  orcid: https://orcid.org/0000-0001-8145-1484
preferred-citation:
  type: article
  title: Human methylome variation across Infinium 450K on the Gene Expression Omnibus
  authors:
  - family-names: Maden
    given-names: Sean K.
  - family-names: Thompson
    given-names: Reid F.
  - family-names: Hansen
    given-names: Kasper D.
  - family-names: Nellore
    given-names: Abhinav
    email: nellore@ohsu.edu
    orcid: https://orcid.org/0000-0001-8145-1484
  year: '2021'
  issue: '2'
  volume: '3'
  journal: NAR Genomics and Bioinformatics
  doi: 10.1093/nargab/lqab025
  url: https://doi.org/10.1093/nargab/lqab025
  start: lqab025
repository: https://bioc.r-universe.dev
repository-code: https://github.com/metamaden/recountmethylation
url: https://github.com/metamaden/recountmethylation
contact:
- family-names: Maden
  given-names: Sean K
  email: maden@ohsu.edu
  orcid: https://orcid.org/0000-0002-2212-4894
references:
- type: article
  title: recountmethylation enables flexible analysis of public blood DNA methylation
    array data
  authors:
  - family-names: Maden
    given-names: Sean K.
  - family-names: Walsh
    given-names: Brian
  - family-names: Ellrott
    given-names: Kyle
  - family-names: Hansen
    given-names: Kasper D.
  - family-names: Thompson
    given-names: Reid F.
  - family-names: Nellore
    given-names: Abhinav
  year: '2022'
  journal: bioRxiv
  doi: 10.1101/2022.05.19.492680
  url: https://www.biorxiv.org/content/10.1101/2022.05.19.492680v1