Package 'recountWorkflow'
| Title: |
recount workflow: accessing over 70,000 human RNA-seq samples
with Bioconductor |
| Description: |
The recount2 resource is composed of over 70,000 uniformly
processed human RNA-seq samples spanning TCGA and SRA,
including GTEx. The processed data can be accessed via the
recount2 website and the recount Bioconductor package. This
workflow explains in detail how to use the recount package and
how to integrate it with other Bioconductor packages for
several analyses that can be carried out with the recount2
resource. In particular, we describe how the coverage count
matrices were computed in recount2 as well as different ways of
obtaining public metadata, which can facilitate downstream
analyses. Step-by-step directions show how to do a gene level
differential expression analysis, visualize base-level genome
coverage data, and perform an analyses at multiple feature
levels. This workflow thus provides further information to
understand the data in recount2 and a compendium of R code to
use the data. |
| Authors: |
Leonardo Collado-Torres [aut, cre],
Abhinav Nellore [ctb],
Andrew E. Jaffe [ctb] |
| Maintainer: |
Leonardo Collado-Torres <[email protected]> |
| License: |
Artistic-2.0 |
| Version: |
1.37.0 |
| Built: |
2026-10-01 15:39:07 UTC |
| Source: |
https://github.com/bioc/recountWorkflow |
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