To cite package ‘recount’ in publications use:

  Collado-Torres L, Nellore A, Kammers K, Ellis SE, Taub MA, Hansen KD,
  Jaffe AE, Langmead B, Leek JT (2017). “Reproducible RNA-seq analysis
  using recount2.” _Nature Biotechnology_. doi:10.1038/nbt.3838
  <https://doi.org/10.1038/nbt.3838>,
  <http://www.nature.com/nbt/journal/v35/n4/full/nbt.3838.html>.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Reproducible RNA-seq analysis using recount2},
    author = {Leonardo Collado-Torres and Abhinav Nellore and Kai Kammers and Shannon E. Ellis and Margaret A. Taub and Kasper D. Hansen and Andrew E. Jaffe and Ben Langmead and Jeffrey T. Leek},
    year = {2017},
    journal = {Nature Biotechnology},
    doi = {10.1038/nbt.3838},
    url = {http://www.nature.com/nbt/journal/v35/n4/full/nbt.3838.html},
  }

  Collado-Torres L, Nellore A, Jaffe AE (2017). “recount workflow:
  Accessing over 70,000 human RNA-seq samples with Bioconductor
  [version 1; referees: 1 approved, 2 approved with reservations].”
  _F1000Research_. doi:10.12688/f1000research.12223.1
  <https://doi.org/10.12688/f1000research.12223.1>,
  <https://f1000research.com/articles/6-1558/v1>.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor [version 1; referees: 1 approved, 2 approved with reservations]},
    author = {Leonardo Collado-Torres and Abhinav Nellore and Andrew E. Jaffe},
    year = {2017},
    journal = {F1000Research},
    doi = {10.12688/f1000research.12223.1},
    url = {https://f1000research.com/articles/6-1558/v1},
  }

  Ellis SE, Collado-Torres L, Jaffe AE, Leek JT (2018). “Improving the
  value of public RNA-seq expression data by phenotype prediction.”
  _Nucl. Acids Res._. doi:10.1093/nar/gky102
  <https://doi.org/10.1093/nar/gky102>,
  <https://doi.org/10.1093/nar/gky102>.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Improving the value of public RNA-seq expression data by phenotype prediction},
    author = {Shannon E. Ellis and Leonardo Collado-Torres and Andrew E. Jaffe and Jeffrey T. Leek},
    year = {2018},
    journal = {Nucl. Acids Res.},
    doi = {10.1093/nar/gky102},
    url = {https://doi.org/10.1093/nar/gky102},
  }

  Collado-Torres L, Nellore A, Kammers K, Ellis SE, Taub MA, Hansen KD,
  Jaffe AE, Langmead B, Leek JT (2024). _Explore and download data from
  the recount project_. doi:10.18129/B9.bioc.recount
  <https://doi.org/10.18129/B9.bioc.recount>,
  https://github.com/leekgroup/recount - R package version 1.31.2,
  <http://www.bioconductor.org/packages/recount>.

A BibTeX entry for LaTeX users is

  @Manual{,
    title = {Explore and download data from the recount project},
    author = {Leonardo Collado-Torres and Abhinav Nellore and Kai Kammers and Shannon E. Ellis and Margaret A. Taub and Kasper D. Hansen and Andrew E. Jaffe and Ben Langmead and Jeffrey T. Leek},
    year = {2024},
    url = {http://www.bioconductor.org/packages/recount},
    note = {https://github.com/leekgroup/recount - R package version 1.31.2},
    doi = {10.18129/B9.bioc.recount},
  }

  Frazee AC, Langmead B, Leek JT (2011). “ReCount: A multi-experiment
  resource of analysis-ready RNA-seq gene count datasets.” _BMC
  Bioinformatics_. doi:10.1186/1471-2105-12-449
  <https://doi.org/10.1186/1471-2105-12-449>,
  <https://doi.org/10.1186/1471-2105-12-449>.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets},
    author = {Alyssa C. Frazee and Ben Langmead and Jeffrey T. Leek},
    year = {2011},
    journal = {BMC Bioinformatics},
    doi = {10.1186/1471-2105-12-449},
    url = {https://doi.org/10.1186/1471-2105-12-449},
  }

  Razmara A, Ellis SE, Sokolowski DJ, Davis S, Wilson MD, Leek JT,
  Jaffe AE, Collado-Torres L (2019). “recount-brain: a curated
  repository of human brain RNA-seq datasets metadata.” _bioRxiv_.
  doi:10.1101/618025 <https://doi.org/10.1101/618025>,
  <https://doi.org/10.1101/618025>.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {recount-brain: a curated repository of human brain RNA-seq datasets metadata},
    author = {Ashkaun Razmara and Shannon E. Ellis and Dustin J. Sokolowski and Sean Davis and Michael D. Wilson and Jeffrey T. Leek and Andrew E. Jaffe and Leonardo Collado-Torres},
    year = {2019},
    journal = {bioRxiv},
    doi = {10.1101/618025},
    url = {https://doi.org/10.1101/618025},
  }

  Imada E, Sanchez DF, Collado-Torres L, Wilks C, Matam T, Dinalankara
  W, Stupnikov A, Lobo-Pereira F, Yip C, Yasuzawa K, Kondo N, Itoh M,
  Suzuki H, Kasukawa T, Hon CC, de Hoon MJ, Shin JW, Carninci P, Jaffe
  AE, Leek JT, Favorov A, Franco GR, Langmead B, Marchionni L (2020).
  “Recounting the FANTOM CAGE–Associated Transcriptome.” _Genome
  Research_. doi:10.1101/gr.254656.119
  <https://doi.org/10.1101/gr.254656.119>,
  <https://doi.org/10.1101/gr.254656.119>.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Recounting the FANTOM CAGE–Associated Transcriptome},
    author = {Eddie-Luidy Imada and Diego Fernando Sanchez and Leonardo Collado-Torres and Christopher Wilks and Tejasvi Matam and Wikum Dinalankara and Aleksey Stupnikov and Francisco Lobo-Pereira and Chi-Wai Yip and Kayoko Yasuzawa and Naoto Kondo and Masayoshi Itoh and Harukazu Suzuki and Takeya Kasukawa and Chung Chau Hon and Michiel JL {de Hoon} and Jay W Shin and Piero Carninci and Andrew E. Jaffe and Jeffrey T. Leek and Alexander Favorov and Glória R Franco and Ben Langmead and Luigi Marchionni},
    year = {2020},
    journal = {Genome Research},
    doi = {10.1101/gr.254656.119},
    url = {https://doi.org/10.1101/gr.254656.119},
  }