Package: reconsi
Type: Package
Title: Resampling Collapsed Null Distributions for Simultaneous
        Inference
Version: 1.25.0
Authors@R: 
    c(person(given = "Stijn", family = "Hawinkel", 
    email = "stijn.hawinkel@psb.ugent.be", 
    role=c("cre", "aut"), comment = c(ORCID = "0000-0002-4501-5180")))
Description: Improves simultaneous inference under dependence of tests
        by estimating a collapsed null distribution through resampling.
        Accounting for the dependence between tests increases the power
        while reducing the variability of the false discovery
        proportion. This dependence is common in genomics applications,
        e.g. when combining flow cytometry measurements with microbiome
        sequence counts.
License: GPL-2
Encoding: UTF-8
RoxygenNote: 7.2.1
Imports: phyloseq, ks, reshape2, ggplot2, stats, methods, graphics,
        grDevices, matrixStats, Matrix
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
biocViews: Metagenomics, Microbiome, MultipleComparison, FlowCytometry
BugReports: https://github.com/CenterForStatistics-UGent/reconsi/issues
LazyData: true
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:51:41 UTC
RemoteUrl: https://github.com/bioc/reconsi
RemoteRef: HEAD
RemoteSha: 1f35a62a8bcb19853eb1a08ff748fa6e3e90d553
NeedsCompilation: no
Packaged: 2026-07-04 07:25:29 UTC; root
Author: Stijn Hawinkel [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-4501-5180>)
Maintainer: Stijn Hawinkel <stijn.hawinkel@psb.ugent.be>