NEWS

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ramwas 1.3.0

NEW FEATURES

• Improved error reporting from parallel jobs
• Improved logging behavior
• Added multiple input checks in the pipeline functions
• Improved MLK behavior in Microsoft R
• Added BED and BedGraph export
• Added Manhattan plot function
• Added ROC curve with AUC calculation
• Made fragment size estimation functions public
• Made PCA plotting functions public
• Added rwDataClass for convenient data access.
• Added getLocations, getMWAS*, getData* functions
• Improved QQ-plot function (more parameters)
• Speed up pvalue2qvalue function for sorted vectors
• Added multithreading in ramwas0createArtificialData()
• Improved testPhenotype() to have consistent input (variables by columns)
• BAM scanning [ramwas1scanBams] rescans BAMs newer than the rbam files

BUG FIXES

• Use importMethodsFrom(filematrix, as.matrix) in NAMESPACE

ramwas 1.0.0

NEW FEATURES

• Added joint methylation-genotype analysis

BUG FIXES

• package under active development