To cite rTRM in publications use:

  Diego Diez, Diego Miranda-Saavedra. rTRMui: an R-based local web
  interface for the prediction of transcriptional regulatory modules.
  2013, submitted

A BibTeX entry for LaTeX users is

  @Article{,
    title = {rTRMui: an R-based local web interface for the prediction of transcriptional regulatory modules},
    author = {{Diego Diez} and {Diego Miranda-Saavedra}},
    year = {2013, submitted},
    journal = {Journal},
  }