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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "rScudo" in publications use:'
type: software
license: GPL-3.0-only
title: 'rScudo: Signature-based Clustering for Diagnostic Purposes'
version: 1.21.0
abstract: SCUDO (Signature-based Clustering for Diagnostic Purposes) is a rank-based
  method for the analysis of gene expression profiles for diagnostic and classification
  purposes. It is based on the identification of sample-specific gene signatures composed
  of the most up- and down-regulated genes for that sample. Starting from gene expression
  data, functions in this package identify sample-specific gene signatures and use
  them to build a graph of samples. In this graph samples are joined by edges if they
  have a similar expression profile, according to a pre-computed similarity matrix.
  The similarity between the expression profiles of two samples is computed using
  a method similar to GSEA. The graph of samples can then be used to perform community
  clustering or to perform supervised classification of samples in a testing set.
authors:
- family-names: Ciciani
  given-names: Matteo
  email: matteo.ciciani@gmail.com
- family-names: Cantore
  given-names: Thomas
  email: cantorethomas@gmail.com
preferred-citation:
  type: article
  title: Rank-based transcriptional signatures
  authors:
  - family-names: Lauria
    given-names: Mario
  journal: Systems Biomedicine
  year: '2013'
  volume: '1'
  issue: '4'
  url: https://www.tandfonline.com/doi/abs/10.4161/sysb.25982
  start: '228'
  end: '239'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/Matteo-Ciciani/scudo
url: https://github.com/Matteo-Ciciani/scudo
contact:
- family-names: Ciciani
  given-names: Matteo
  email: matteo.ciciani@gmail.com
references:
- type: article
  title: 'rScudo: an R package for classification of molecular profiles using rank-based
    signatures'
  authors:
  - family-names: Ciciani
    given-names: Matteo
  - family-names: Cantore
    given-names: Thomas
  - family-names: Lauria
    given-names: Mario
  journal: Bioinformatics
  year: '2019'
  month: '5'
  issn: 1367-4803
  doi: 10.1093/bioinformatics/btaa296
  url: https://doi.org/10.1093/bioinformatics/btaa296
  notes: btaa296