NEWS

qsvaR 1.7.0

BUG FIXES

Fixed the error messages displayed by getDegTx(), k_qsvs(),get_qsvs(), getPCs(), DEqual() and qSVA() to handle different types of situations.
Improved unit tests for getDegTx(), k_qsvs(),get_qsvs(), getPCs(),DEqual() and qSVA().

qsvaR 1.6.0

BUG FIXES

getDegTx() can handle ENSEMBL IDs as input.
DEqual() can handle ENSEMBL IDs as input.
Improved unit tests for getDegTx() and DEqual().

qsvaR 1.5.3

BUG FIXES

Fixed the error messages displayed by k_qsvs() to handle different types of situations. We implemented this update with @HediaTnani, @reneegf, and @lahuuki.

qsvaR 1.5.2

BUG FIXES

Fixed a bug in qSVA() which was not passing sig_transcripts to getDegTx(). Related to https://github.com/LieberInstitute/qsvaR/issues/29.
Fixed the documentation to highlight when users should use set.seed() to ensure the reproducibility of their results. Related to https://github.com/LieberInstitute/qsvaR/issues/28.

qsvaR 1.5.1

SIGNIFICANT USER-VISIBLE CHANGES

Hedia Tnani is now the maintainer of qsvaR.

qsvaR 0.99.0

NEW FEATURES

This is the initial version of the second iteration of the qSVA framework, which was initially described by Jaffe et al, PNAS, 2017 https://doi.org/10.1073/pnas.1617384114.