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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "qsea" in publications use:'
type: software
license: GPL-2.0-only
title: 'qsea: IP-seq data analysis and vizualization'
version: 1.31.0
doi: 10.1093/nar/gkw1193
abstract: qsea (quantitative sequencing enrichment analysis) was developed as the
  successor of the MEDIPS package for analyzing data derived from methylated DNA immunoprecipitation
  (MeDIP) experiments followed by sequencing (MeDIP-seq). However, qsea provides several
  functionalities for the analysis of other kinds of quantitative sequencing data
  (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential
  enrichment between groups of samples.
authors:
- family-names: Lienhard
  given-names: Matthias
  email: lienhard@molgen.mpg.de
  orcid: https://orcid.org/0000-0002-2549-3142
- family-names: Chavez
  given-names: Lukas
  orcid: https://orcid.org/0000-0002-8718-8848
- family-names: Herwig
  given-names: Ralf
  orcid: https://orcid.org/0000-0002-9335-1760
preferred-citation:
  type: article
  title: QSEA -- modelling of genome-wide DNA methylation from sequencing enrichment
    experiments
  authors:
  - family-names: Lienhard
    given-names: Matthias
    email: lienhard@molgen.mpg.de
    orcid: https://orcid.org/0000-0002-2549-3142
  - family-names: Grasse
    given-names: Sabrina
  - family-names: Rolff
    given-names: Jana
  - family-names: Frese
    given-names: Steffen
  - family-names: Schirmer
    given-names: Uwe
  - family-names: Becker
    given-names: Michael
  - family-names: B\"orno
    given-names: Stefan
  - family-names: Timmermann
    given-names: Bernd
  - family-names: Chavez
    given-names: Lukas
    orcid: https://orcid.org/0000-0002-8718-8848
  - family-names: S\"ultmann
    given-names: Holger
  - family-names: Leschber
    given-names: Gunda
  - family-names: Fichtner
    given-names: Iduna
  - family-names: Schweiger
    given-names: Michal R
  - family-names: Herwig
    given-names: Ralf
    orcid: https://orcid.org/0000-0002-9335-1760
  month: '12'
  year: '2016'
  journal: Nucleic acids research
  url: https://www.ncbi.nlm.nih.gov/pubmed/27913729
  doi: 10.1093/nar/gkw1193
repository: https://bioc.r-universe.dev
date-released: '2023-03-22'
contact:
- family-names: Lienhard
  given-names: Matthias
  email: lienhard@molgen.mpg.de
  orcid: https://orcid.org/0000-0002-2549-3142