Changes in version 1.25.1                        

    o   Bugfixes:
	- fixed issue with R4.3 ("cannot xtfrm data frames")
	- fixed documentation
	- updated description file

                       Changes in version 1.21.2                        

    o   increased upper bound for enrichment model, allowing for a steeper increase in enrichment with CpG density. (Github PR \#9)

                       Changes in version 1.21.1                        

    o   Bugfixes:
	- makeTable with one window (github PR \#8)

                        Changes in version 1.7.4                        

    o   Reformated NEWS file

                        Changes in version 1.7.3                        

    o   Adapted vignette to BiocManager installation process

                        Changes in version 1.7.2                        

    o   Bugfixes: 
	- addCoverage fixed fragment size sd for chromosomes with 1 read
	- addCoverage fixed missing regions in count_matrix for chromosomes without any reads

                        Changes in version 1.7.1                        

    o   Bugfix: addCoverage crashes when there are no reads for chromosome/contig

                        Changes in version 1.5.1                        

    o   Bugfix: Crash due to changes in getOverlaps

                        Changes in version 1.3.2                        

    o   New feature:
	- select active BSgenome masks for pattern density estimation

    o   Bugfix:
	- adaptions to changed behavior of GenomicRanges

                        Changes in version 1.3.1                        

    o   transition to Github

                        Changes in version 1.1.6                        

    o   New Feature:
	- addNewSample function

                        Changes in version 1.1.5                        

    o   New Feature:
	- multicore support for GLM fitting

                        Changes in version 1.1.4                        

    o   Bugfixes:
	- fitting of GLM crashed when applied genome wide on > 150 samples

                        Changes in version 1.1.3                        

    o   Updated citation.

    o   Runtime improvement:
	- direct implementation of quantile function 
	using quantile function of gamma distribution

                        Changes in version 1.1.2                        

    o   Bugfixes:
	- addCNV: Fixed crash when only one normal sample is present
	- addCoverage: fixed chr sorting issue in absence of bam index

                        Changes in version 1.0.0                        

    o   first stable release

                       Changes in version 0.99.6                        

    o   Bugfixes:
	- addCNV: check for sample table now checks specified files for CNV

                       Changes in version 0.99.5                        

    o   New features
	- user level functions now have sample id check
	- more detailed tutorial, including case study

    o   Bugfixes:
	- makeTable: fixed groupMeans without individual samples

                       Changes in version 0.99.4                        

    o   New functions:
	- multicore support for bam file processing
	- memory and runtime optimizations

    o   Bugfixes:
	- bug in consideration of zygosity of chromosomes

                       Changes in version 0.99.3                        

    o   Bugfixes:
	- updated imported NAMESPACE 

                       Changes in version 0.99.2                        

    o   New functions:
	- option to set ploidity for chromosomes, i.e. to account for sex chromosomes

    o   Bugfixes:
	- fixed bug resulting in NA values at quantile calculation for beta estimates
	- minor fixes

    o   Documentation:
	- changed vignette builder to knitr/BiocStyle/html

                       Changes in version 0.99.1                        

    o   Bugfixes:
	- fixed crashing plotCoverage with one sample
	- qseaPCA-show
	- typo in error-message of getOffset (rpw)
	- resolved namespace issues

                       Changes in version 0.99.0                        

    o   Submission to Bioconductor