Changes in version 1.31.2 o Converted the vignette from Sweave/PDF (qPLEXdata.Rnw) to R Markdown/HTML (qPLEXdata.Rmd) using BiocStyle, removing the LaTeX build dependency. Changes in version 1.31.1 o Fixed vignette build error: pass the contrast name (names(contrasts)) rather than the named contrast vector to getContrastResults(), matching the current qPLEXanalyzer API. Changes in version 1.1.1 o Fixed broken code in Vignette Changes in version 0.99.0 o Initial commit with data from the qPLEX-RIME and Full proteome TMT.