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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "psichomics" in publications use:'
type: software
license: MIT
title: 'psichomics: Graphical Interface for Alternative Splicing Quantification, Analysis
  and Visualisation'
version: 1.31.0
abstract: Interactive R package with an intuitive Shiny-based graphical interface
  for alternative splicing quantification and integrative analyses of alternative
  splicing and gene expression based on The Cancer Genome Atlas (TCGA), the Genotype-Tissue
  Expression project (GTEx), Sequence Read Archive (SRA) and user-provided data. The
  tool interactively performs survival, dimensionality reduction and median- and variance-based
  differential splicing and gene expression analyses that benefit from the incorporation
  of clinical and molecular sample-associated features (such as tumour stage or survival).
  Interactive visual access to genomic mapping and functional annotation of selected
  alternative splicing events is also included.
authors:
- family-names: Saraiva-Agostinho
  given-names: Nuno
  email: nunodanielagostinho@gmail.com
  orcid: https://orcid.org/0000-0002-5549-105X
- family-names: Barbosa-Morais
  given-names: Nuno Luís
  orcid: https://orcid.org/0000-0002-1215-0538
preferred-citation:
  type: article
  title: 'psichomics: graphical application for alternative splicing quantification
    and analysis'
  authors:
  - family-names: Saraiva-Agostinho
    given-names: Nuno
    email: nunodanielagostinho@gmail.com
    orcid: https://orcid.org/0000-0002-5549-105X
  - family-names: Barbosa-Morais
    given-names: Nuno L
  year: '2019'
  month: '1'
  journal: Nucleic Acids Research
  volume: '47'
  issue: '2'
  url: https://doi.org/10.1093/nar/gky888
  start: e7
repository: https://bioc.r-universe.dev
repository-code: https://github.com/nuno-agostinho/psichomics
url: https://nuno-agostinho.github.io/psichomics/
contact:
- family-names: Saraiva-Agostinho
  given-names: Nuno
  email: nunodanielagostinho@gmail.com
  orcid: https://orcid.org/0000-0002-5549-105X
identifiers:
- type: url
  value: https://github.com/nuno-agostinho/psichomics/